Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31190 588 / 0 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 144 / 3e-38 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 129 / 3e-33 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 128 / 4e-32 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 109 / 8e-26 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 94 / 1e-20 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003558 [exp] 769 / 0 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10038136 [exp] 144 / 4e-38 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 144 / 7e-38 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 140 / 3e-36 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 139 / 5e-36 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 125 / 2e-31 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 117 / 2e-28 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 115 / 8e-28 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10037076 [exp] 93 / 4e-20 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224000 [exp] 636 / 0 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 302 / 9e-102 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 139 / 4e-36 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 123 / 1e-30 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 121 / 3e-30 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 104 / 4e-24 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 77 / 6e-15 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10033888 pacid=23172883 polypeptide=Lus10033888 locus=Lus10033888.g ID=Lus10033888.BGIv1.0 annot-version=v1.0 ATGGAAGTCAGCTGGATTGAAGCCTCTGATTCTGTTTCCCGTCGTTTCCAGTTTGAACCCGACGGTTACCTTTCTATCCTGGCTTCGTACCATGAACGCT TAAAATTTGAATTGCTTGGACTTGCTGACAGCAAGCTCTGCTGGGTCTTACTAATGTTCTTGGTTACTTACACTAGTGTAAATGAAGGTTATCTCAGATA CACACAATTCCGGGCACTTCAGCATGTCTCCAGTGCAGCATTATCTGTTCTATCAACTCAGTCCCTACTATTTGCTGCAGGGTTGCGACCTACACCAGCT CAGGCGACTGCCGTGAGTTGGATATTGAAGGATGGGATGCAACACGTTGGAAAGCTGATATGTAGCAATTTGGGTGCTAGAATGGACTCTGAACCAAAAC GTTGGAGAATACTGGCTACGATTATCACAGCTGATTTGCTATATGATCTGGGCTCTGGGTTGGAAGTTATTTCTCCATTATGCCCTAGTCTCTTTCTCGA AGTAGCTGGACTTGGCAATTTTGCTAAGGGGATGGCAGTAGTTGCGGCAAGGGCAACAAGACTACCAATATATTCATCATTTGCCAAAGAAGGCAATTTG AGTGACCTGTTTGCTAAGGGAGAGGCCATCTCAACACTTTTCAATACTCTTGGACTGGGATTAGGGATTCAACTAGCAACTACAGTCTGTTCCACGACGC AGGGGAAGATGGTGGTCGGGCCTCTTTTGTCTGTGATTCATGTTTATAGTGTCGTCGAGGAAATGAAAGCCGCTCCAGTAAATACATTAAATCCACAAAG GACTGCACTAATTGTGGCCGATTTTGTAAAGGATGGGAAAGTATCAAGCCCTGCTGATATAAGGTACCATGAAGATCTGATGTTCCCGGGAAGACTTATA AAAGATGCCGGCAACGTAAAAGTGGGGCAGGCTCTACACAGGGTTATCAAGCCTTCAAAACTCGACGAATACAAAGAGATGTTCCCGAACGAAAAATTCG TTATCAGCCGGGGTAAAAAGAACTGCACCAACATGGTACTGGAGCACGATGCTACTGGCGAAGATGCATTGAGGGGTTGGCTGGTAGCTGCATATGCTGC CAACATGGAAAATTCGTCCAATGGGTTCAGTTCGATAGGGTTGCAAGATGCTTACGAGAAGATGGACAGTGCATTCGACAAGTTCACGTCTGAGTTGCAT GCCAAAGGCTGGCATACTGATCATTTTCTGGATGGAACCGGAACCCGTTTTGCCTGGTAG
AA sequence Show only first row Show all	>Lus10033888 pacid=23172883 polypeptide=Lus10033888 locus=Lus10033888.g ID=Lus10033888.BGIv1.0 annot-version=v1.0 MEVSWIEASDSVSRRFQFEPDGYLSILASYHERLKFELLGLADSKLCWVLLMFLVTYTSVNEGYLRYTQFRALQHVSSAALSVLSTQSLLFAAGLRPTPA QATAVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILATIITADLLYDLGSGLEVISPLCPSLFLEVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNL SDLFAKGEAISTLFNTLGLGLGIQLATTVCSTTQGKMVVGPLLSVIHVYSVVEEMKAAPVNTLNPQRTALIVADFVKDGKVSSPADIRYHEDLMFPGRLI KDAGNVKVGQALHRVIKPSKLDEYKEMFPNEKFVISRGKKNCTNMVLEHDATGEDALRGWLVAAYAANMENSSNGFSSIGLQDAYEKMDSAFDKFTSELH AKGWHTDHFLDGTGTRFAW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10033888 [exp]	0	1
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	2.0	0.6361
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	95.3	0.5172
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	269.1	0.4376

Compare expression of checked genes

Lus10033888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.