Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003556 [exp] 280 / 1e-96 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038400 [exp] 92 / 3e-23 AT2G20500 58 / 7e-11 unknown protein Potri.005G224200 [exp] 78 / 6e-18 AT2G20500 53 / 3e-09 unknown protein Potri.008G167200 [exp] 52 / 3e-08 AT4G14380 87 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033890 pacid=23172765 polypeptide=Lus10033890 locus=Lus10033890.g ID=Lus10033890.BGIv1.0 annot-version=v1.0 ATGTCGTCGTGCTTCAACCTCAGGCTTCCACGCCCAAACAAGGCATGGAAGATCTTCACTTCCAAGCTCCGTACCAAACTCCACAAACTCCACAACAACC CCAAATCCCTCAAAAACAAAAATCCCAAACACATTATCTCCTCCACCTCTACCCTCACTTACCCCATCATCAATCCTGCTGCGAACAAAACTTTCGTTCC TTGTAATTCTCTTTCGAAGGAGTATCGGAAGATCAGGGGGGGGCGGATGGAAATCAGCCTGCCTTGCCGCGGTCTTCCATTCAAACGGAAGAGCAGCAGA CGGCTCCGTTTCTACAGCAGGAGCTGCTCTGCTGCTCCGGTTTTCGTCGACAGGATCTTCGTAGTAGAGCCCCCGGTAATGGAGGTGCTGACGACGACTC AGTGTGAGGTGTCGTCAAGTGGGAAGAAGATTAATGAGTTGATGGCAGCTGGGACGAGTGGGGAGGAGGAGGGTGGAGCTGATGAGATGTGGGAGTCGTT GGGATATGAATCGCCACTGATGAGGGCGATTGATGAGAGGGCTGAAGAGTTCATTTCTAGTTTCAAGGCTGAGATGCAAGTTCGGGAGAGGATGATTTCC CTTCGTAGCTTGTAG
AA sequence Show only first row Show all	>Lus10033890 pacid=23172765 polypeptide=Lus10033890 locus=Lus10033890.g ID=Lus10033890.BGIv1.0 annot-version=v1.0 MSSCFNLRLPRPNKAWKIFTSKLRTKLHKLHNNPKSLKNKNPKHIISSTSTLTYPIINPAANKTFVPCNSLSKEYRKIRGGRMEISLPCRGLPFKRKSSR RLRFYSRSCSAAPVFVDRIFVVEPPVMEVLTTTQCEVSSSGKKINELMAAGTSGEEEGGADEMWESLGYESPLMRAIDERAEEFISSFKAEMQVRERMIS LRSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033890 [exp]	0	1
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	2.4	0.9372
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	2.6	0.9448
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	3.7	0.9366
					Lus10016944 [exp]	6.0	0.9425
AT2G39440			unknown protein		Lus10018300 [exp]	6.5	0.9415
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	8.8	0.9101
					Lus10003556 [exp]	8.9	0.9366
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	9.2	0.9260
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	9.6	0.9413
AT5G05365			Heavy metal transport/detoxifi...		Lus10040965 [exp]	10.2	0.9282

Compare expression of checked genes

Lus10033890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.