Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03890 244 / 2e-75 RmlC-like cupins superfamily protein (.1) AT5G44120 240 / 1e-73 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03880 231 / 4e-70 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 181 / 1e-50 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 119 / 9e-30 RmlC-like cupins superfamily protein (.1) AT1G07750 112 / 5e-27 RmlC-like cupins superfamily protein (.1) AT2G18540 62 / 4e-10 RmlC-like cupins superfamily protein (.1) AT3G62020 52 / 2e-07 GLP10 germin-like protein 10 (.1.2) AT1G02335 50 / 1e-06 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G26700 49 / 2e-06 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003554 [exp] 848 / 0 AT1G03890 282 / 5e-90 RmlC-like cupins superfamily protein (.1) Lus10010341 [exp] 330 / 3e-108 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 319 / 2e-103 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 310 / 3e-100 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 303 / 1e-97 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 303 / 2e-97 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 295 / 1e-94 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 289 / 7e-92 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 281 / 2e-89 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224400 [exp] 471 / 1e-163 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 335 / 4e-110 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 332 / 1e-108 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 324 / 1e-105 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 320 / 4e-104 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 311 / 1e-100 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 290 / 9e-93 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 261 / 1e-81 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 105 / 7e-25 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 104 / 2e-24 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10033893 pacid=23172892 polypeptide=Lus10033893 locus=Lus10033893.g ID=Lus10033893.BGIv1.0 annot-version=v1.0 ATGATGGCAACCAAACTAGCCGCCGCATTCCTTGTTCTCTCTTGTCTCGCCGCCGCCACCTCCGCCGAGCACAATCAAGGCCGGACGACCACTCCTCTGG AGTACCAATTCCAGGCTCAGCATTGCAACCTCGACCGCATCTCTCCAGCCCAGCCTAACTTCCGCCTGCAATCGGAAGGTGGAGTCACCGAGCTATGGAA CCCCCACGAGGACCAGTTCATCTGCGCCGGCGTCGCTCCGTTCCGTGACGTCATCCAGCCCCAATCCCTCTCCGTCCCCAAGTTCTTCCCCGCCCCTCGC CTCGTCTACGTCCAGCAAGGGAACGGAGTGTTGGGGTTGAACTTTCCGGGCTGCCCGGCGATGTACCACAGCGGGCAGGCACAAGGACAACAGCAGAGAG GATCAAGGAGGATGATGGGAGGAAGCGGAGGAGACGAGCACCAAAAGATCCACAGGATTCGCGAGGGTGACGTCATCGCCATCCCTGCCGGCGTTGCTAC TTGGGGCTACAACGACGGTAACCAGGACCTCGTCTACGTCACCTTTGTTGACCTCAACAACGACGACAACCAGCTCGATCAAAACCTCAGGGGGTTCTTG CTGGGAGGAGGACAATCGGATCAGCAAAGGCAGAGCAGGCCGACATGGGGGAGGAGGACTTACCAGATAGGGGAAGGAAGGGAAGCCGGCGGGCAGTCGC TGATGTCGGCCAACGTCTTCCAAGGGTTCGACGAGGAGCTGATCGCCGAGGCGTTCGACGTTCCAACGGAGACCGTCAGGAGGATGCAGAACGACAACAG GGGTATTATCGTCAGATGCCAGGAAGAGATGAGCTTCGTTACCGAGGAAGAACAACAGATGCAGGAGATGGACAGGTGGCGCCAATCTAAAGGAGGAAGG TACAGCATTAACGACGAAGAAAACGGAATCGAAGAGACCTACTGCAGCATGAAGATCAAGCACAACCTGGAGAAACCACTCCAGGCCGATTTCTTCAGCA GGGACGCCGGTAAGATCAACGTCGTCAACCGCGACAAGCTCCCAATCCTTGGCTACTTGGACATGAGCGCCGAGCGAGGCACCATTTTGCCCAATGCAAT GTACACCCCACACTGGTCAATGACAGACCACAGGGTGGTGTACGTGGTGGCGGGAGAACTACAGGTGCAAATCTCCGACGACAAAGGAAACCAGATCATG AACAACAGGGTGCAGGAAGGGGAAATGTTCGTGATCCCACAGTTCTACGCCACAATGGGAATGGCAGGGAACCAAGGGTGTGAGTATCTGACGTTTAAGA CGTCTGGGAAGCCGATGAAGCATCAGATAGGGAAGCCGATGAAGCATCAGATGGCAGGGTACACATCGGTGATGAGAGCGATGCCGATCGACGTGATCAG CAACTCCTTCCAGATGTCGCCGAGGGAGGCAGAGCAGCTGAAGATGAACAGAGACCCTGAGTCCATGTTGCTCTCTCCCACCAGCGGAAGCAGCAGGGTT TAG
AA sequence Show only first row Show all	>Lus10033893 pacid=23172892 polypeptide=Lus10033893 locus=Lus10033893.g ID=Lus10033893.BGIv1.0 annot-version=v1.0 MMATKLAAAFLVLSCLAAATSAEHNQGRTTTPLEYQFQAQHCNLDRISPAQPNFRLQSEGGVTELWNPHEDQFICAGVAPFRDVIQPQSLSVPKFFPAPR LVYVQQGNGVLGLNFPGCPAMYHSGQAQGQQQRGSRRMMGGSGGDEHQKIHRIREGDVIAIPAGVATWGYNDGNQDLVYVTFVDLNNDDNQLDQNLRGFL LGGGQSDQQRQSRPTWGRRTYQIGEGREAGGQSLMSANVFQGFDEELIAEAFDVPTETVRRMQNDNRGIIVRCQEEMSFVTEEEQQMQEMDRWRQSKGGR YSINDEENGIEETYCSMKIKHNLEKPLQADFFSRDAGKINVVNRDKLPILGYLDMSAERGTILPNAMYTPHWSMTDHRVVYVVAGELQVQISDDKGNQIM NNRVQEGEMFVIPQFYATMGMAGNQGCEYLTFKTSGKPMKHQIGKPMKHQMAGYTSVMRAMPIDVISNSFQMSPREAEQLKMNRDPESMLLSPTSGSSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	1.4	0.9373
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	1.7	0.8940
					Lus10028940 [exp]	2.4	0.9151
					Lus10033191 [exp]	3.5	0.8911
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	4.5	0.8324
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10021821 [exp]	5.3	0.7773
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034333 [exp]	8.1	0.7076
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10002810 [exp]	9.7	0.7655
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	17.0	0.6930
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	17.2	0.8242

Compare expression of checked genes

Lus10033893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.