Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 213 / 2e-60 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 202 / 3e-57 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 203 / 6e-56 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 191 / 1e-53 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 166 / 6e-43 PATL2 PATELLIN 2 (.1) AT3G23280 153 / 4e-40 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G72150 151 / 1e-38 PATL1 PATELLIN 1 (.1) AT4G14365 116 / 8e-28 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT2G21520 49 / 9e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 49 / 1e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003552 [exp] 691 / 0 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10000102 [exp] 600 / 0 AT4G09160 182 / 3e-53 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10033896 [exp] 306 / 6e-97 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10038435 [exp] 241 / 4e-71 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 223 / 3e-63 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012219 [exp] 198 / 5e-57 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 197 / 6e-56 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 199 / 8e-56 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 165 / 1e-45 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224800 [exp] 327 / 3e-104 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.001G461400 [exp] 255 / 2e-76 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G106000 [exp] 227 / 5e-65 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 217 / 2e-61 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 216 / 5e-61 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 216 / 5e-61 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 215 / 1e-60 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.016G127700 [exp] 204 / 3e-58 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.013G105900 [exp] 205 / 2e-57 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 202 / 3e-56 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10033895 pacid=23172897 polypeptide=Lus10033895 locus=Lus10033895.g ID=Lus10033895.BGIv1.0 annot-version=v1.0 ATGCAATTCCCGGCGAATCATTCATCTATTCATCCGGTCACCACTGGAGCAGAATTGTATTCAACCATGGGGGAGAAACTAGAGAGGAAAAAACCACATG ATCATGTGTCCGAATCAAAAGACAAACAGGATAAACAACAACAACAAGATGACGACGACGAGGAGGAGGAAATCGGCGAACATGAAAATGTAGCAGCAAT CATAGACGAAGAAATCTCGACGTACTGCGATAAACACATGGAAATTCAAAAAGATCCCGTAGAGCATAAGATGCGGAAGAAGCGAGCGTTGATGAAACTG AAAACCATGGTTGAGGATGCAATCTCAGGTAATTACCTTTTGGAAAAACCTAAAAAATCAATTTTCAAGAAGAACAAAACCAAGGAATTGCAACAATTAG AAATGGACAATACTACCCTTTGGGGGGTTCCTCTGCTTTCCAGCAAAGGCCATGAAGGAACTGAAATAGTGCTCTTGAAGTTCCTCAAGGCGAATGACTA CAAGGTCCATTCGGCATATTACATGCTCCGCAAGGTCTTGAAATGGAGGAAGGAGTATAAAGTCGATTCTATCCTTGATGAGGATCTTCTGAACCAAAAT GATGATAATGTGAGTTTGAATAATGTTGTCCGTACCGGGACTAGTGTGGATCGACAAGGCCATCCGTTGTACTACACCATGTACGGTGCGTTCAAGGACA AGAATTTGCGTACCAAAGTGTTTGGAACGGAAGAGAGTCGCGAGAAACTCACGAGGTTGAAGATCCAGTACCTCGAGAAGAGCATCAAACAGTTGAGTTT TAAGTCTGGTGAGGCGAATTCGGTTGTGCAGATCACTGATTTGAAGAATTTTCCGGCACCGATGAAGGAGCTCAACTCTGTTACCGAGAAGATTCTTACA TTGTTCCAATCTAACTATCCTGGCATCATCAATAAGAATATACTGATTAATGTTCCATTCTGGTACTACACGTCACGAGTTGTGACATTAAAACTCAAGA ATCCAAGAGCAAAGAAGAAGTTTATTCTAGCTAGGCCTTCAAATGTCACACAAACCCTTTTAAAGTACATATCAATAGAGCAACTCCCAGTTCAATATGG TGGTCTGAAGAGGGAAAATGATGTCGAGTTTTCCCCAGAAGACAAAGTATTAGAGCATACAATAAGAGCTAGTTCGACCGGCCATGTAAACATTCCCATT AATGAGCTATTGCTCTATTGTATCCTTTCAATTTCTCGTAATGTGATTGTGTGGATTCCTCTGCAATGCATCGACAAAGAAGGAAACACTCATCTGATTG TGGCTTGTAAAGATTCGGCATTTCTCAATGTTGCAGTAGCTATGATTGAATTGGGAGCCAACGTTAATGCTTACGGTCCGGCTGGTCGCCGTGGTCGTAC TCCTTTACATCATGCTGCTGGAAAAGGGCTGGAGGAGACTGTCACGCTTCTTCTGTTTAGTGATGGTAGTGCATTTCCAGGATCATATTTGTCTTTTCTC TGGCTGGCTGCGAGAATTTTATGGTCCAGGATTTTGAAAGCATTTGCTCCTCGCTTGTTATCAAGCAAAGTGATCTGGGCAGTTGTTCTGCCGCATAGTT GTATGAATCCTACGAGACAATTCAGATTGCAGCTTGCTGTATATAATAATAAGCAGGAGTCTCAAGCTTGTACAGTAATACCTCTTTGGAAAGCCAAGAT TGAAGAACCTAAAATTGACCAGCCAGATCCAGAAATGACTGTGTTAGACCAGTCCACAAATATTCGATATTATTTTGCATCGTCAACTCAGAGTGACAAG CATCAGCCTCGCTTGCTATATGATGCATGCACATGCATTACAGAGGTTGGGCCTACGGCAAGGCATCAGCATTTATCACTAAGTGTATCCATCCAATCTG CCATGGAAGATGTTCCAGACACTAGGCCAATTAGCAGTGCAGCTCATTCTCGAATGCATCACAATAACCTCCCTGCTTCATTTGTTTCATCAGCAGCTCC ATCTGCCCCTCCAATTCCTGACGTTGCAGCTATAAACGAAGGTCCTATCAACAACTACCCATCGATCGACCTTGGTCCAGTCGATTTCTTTGAGCAAGGA GCTTCTTCGGCAACAAGCCGCACGAAGGATGATGGGACGTACTCTTCTTCTTCTTCGTTTGGTATAGAGGAAATTAGGAGGGTTTTATCAAAACTTTGA
AA sequence Show only first row Show all	>Lus10033895 pacid=23172897 polypeptide=Lus10033895 locus=Lus10033895.g ID=Lus10033895.BGIv1.0 annot-version=v1.0 MQFPANHSSIHPVTTGAELYSTMGEKLERKKPHDHVSESKDKQDKQQQQDDDDEEEEIGEHENVAAIIDEEISTYCDKHMEIQKDPVEHKMRKKRALMKL KTMVEDAISGNYLLEKPKKSIFKKNKTKELQQLEMDNTTLWGVPLLSSKGHEGTEIVLLKFLKANDYKVHSAYYMLRKVLKWRKEYKVDSILDEDLLNQN DDNVSLNNVVRTGTSVDRQGHPLYYTMYGAFKDKNLRTKVFGTEESREKLTRLKIQYLEKSIKQLSFKSGEANSVVQITDLKNFPAPMKELNSVTEKILT LFQSNYPGIINKNILINVPFWYYTSRVVTLKLKNPRAKKKFILARPSNVTQTLLKYISIEQLPVQYGGLKRENDVEFSPEDKVLEHTIRASSTGHVNIPI NELLLYCILSISRNVIVWIPLQCIDKEGNTHLIVACKDSAFLNVAVAMIELGANVNAYGPAGRRGRTPLHHAAGKGLEETVTLLLFSDGSAFPGSYLSFL WLAARILWSRILKAFAPRLLSSKVIWAVVLPHSCMNPTRQFRLQLAVYNNKQESQACTVIPLWKAKIEEPKIDQPDPEMTVLDQSTNIRYYFASSTQSDK HQPRLLYDACTCITEVGPTARHQHLSLSVSIQSAMEDVPDTRPISSAAHSRMHHNNLPASFVSSAAPSAPPIPDVAAINEGPINNYPSIDLGPVDFFEQG ASSATSRTKDDGTYSSSSSFGIEEIRRVLSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10033895 [exp]	0	1
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	83.8	0.7668
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	119.7	0.7549
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043147 [exp]	128.7	0.7464
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	153.2	0.7216
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	159.3	0.7098

Compare expression of checked genes

Lus10033895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.