Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 294 / 7e-96 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 226 / 4e-70 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 78 / 1e-15 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 73 / 7e-14 AKR2B ankyrin repeat-containing 2B (.1) AT5G40160 49 / 4e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G14255 49 / 6e-06 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G07840 45 / 2e-05 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT4G27780 45 / 5e-05 ACBP2 acyl-CoA binding protein 2 (.1) AT5G13300 45 / 6e-05 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G53470 45 / 8e-05 ACBP1 acyl-CoA binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033895 [exp] 307 / 1e-97 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009674 [exp] 244 / 8e-76 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10003551 [exp] 181 / 9e-55 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10013859 [exp] 71 / 4e-13 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 69 / 3e-12 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10026575 [exp] 59 / 3e-09 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10032165 [exp] 50 / 1e-06 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032850 [exp] 50 / 2e-06 AT5G65860 523 / 0.0 ankyrin repeat family protein (.1.2) Lus10021508 [exp] 48 / 3e-06 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225300 [exp] 377 / 3e-127 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 313 / 1e-102 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 309 / 3e-101 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 295 / 1e-95 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.004G210000 [exp] 71 / 3e-13 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 71 / 4e-13 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.013G062000 [exp] 59 / 3e-09 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.018G011300 [exp] 51 / 5e-07 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.006G121500 [exp] 49 / 1e-06 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.016G097900 [exp] 46 / 1e-05 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10033896 pacid=23172835 polypeptide=Lus10033896 locus=Lus10033896.g ID=Lus10033896.BGIv1.0 annot-version=v1.0 ATGTTCAAAAAACTCCTGCTTTATGCCATTGGACAGAGTTTGGGTACCGCCAACAAAACCCAATCCAGAGAGGAGCTCTTGTTTCAATCCGTTCTCGTCG GCGACATCCAAGGCATCCGAGCTCTTTGCGGACGTGGCGCTAATCTTGAGTGTATCGACAGAGATGGAAACACTCCTCTCATTGTGGCTTGTAAAGATTC GGCATTGCTCAATGTTGCAGTAGCTTTGATTGAATTGGGAGCCAACGTTAATGCTTATGGTCCCGGTCGCCGTGGTGGTACTCCTTTACATCATGCTGCC GGAAAAGGGTTGGAGGAGACTGTCAGACTTCTTCTGTTTAGTGGAGCAAATGCATTATTGAGAAATGACGATGGTCAAACAGCGCTTGATTTTGCCAGAA TAAGTCGGAATGCAGTTGTAGTTCGTGCAATTGAGGATCATATTTGTCTTTTCTCTGGCTGGCTGCGACAATTTTATGGTCCAGGATTTCTGAAAGCATT TGCTCCTCGGTTATTATCAACCAAAGTCTGGGCAGTTGTTCTGCCCACCTATAGTTCTATGAATCCTGCGAGAAATTTCAGAGTGCAGCTTGCTGTCTAT ACTGATAAGCAGGAGTCTCAAGCTTGTACAATAGTTCCTCTCTGGAAAGCCAAGATTGAAGAACCTAAATTTGACCAGCCAGATCCAGAAATGATTGCGT TAGACCAGTCCACGAATATTCGTTATCATTTTGCATCGTCAACTCCTGGTGACAAGCATCAGCTTCGCTTGCTATATGATGCATGCACAGGCATTACACA GGTTGGGCCAATGGCGAGGCATCAACATTTACAACATGAAAACCCGGACGAAGCTGTTCAACTGGCAATGGCACTAAGTGCATCCATCCAATCTGCCATG GAGGACAGTCAACAACTCCCGAGTAACCCCCATGGTCCTGGAGCTATCGATACCAATGGTTGGGGAGATTCAGCACTTCCCGAGAGTCACAGCGGATGGG GAGCCCCTGTTGAACCCCCACACTCGGAAGCAAGTAGCAGTGGACGAGTAGTAGATGAGCCAGCGAAAGAGAATTACAACGGTTGGGATGATTTTCCCAA CACTAAGGCAATTAGCAATGCAACTCATTCTCAAGTGCACCCTGCTGCATCTATTTCGTCAACAGCTCCGTCTGCCCCTCCAATTCCTGACGTTCCAGAT GTCAACGAAGGCCCTATCCACTATCCATCGATCAACCTTGCTCCAGCCGATTTCTCTGAGTAA
AA sequence Show only first row Show all	>Lus10033896 pacid=23172835 polypeptide=Lus10033896 locus=Lus10033896.g ID=Lus10033896.BGIv1.0 annot-version=v1.0 MFKKLLLYAIGQSLGTANKTQSREELLFQSVLVGDIQGIRALCGRGANLECIDRDGNTPLIVACKDSALLNVAVALIELGANVNAYGPGRRGGTPLHHAA GKGLEETVRLLLFSGANALLRNDDGQTALDFARISRNAVVVRAIEDHICLFSGWLRQFYGPGFLKAFAPRLLSTKVWAVVLPTYSSMNPARNFRVQLAVY TDKQESQACTIVPLWKAKIEEPKFDQPDPEMIALDQSTNIRYHFASSTPGDKHQLRLLYDACTGITQVGPMARHQHLQHENPDEAVQLAMALSASIQSAM EDSQQLPSNPHGPGAIDTNGWGDSALPESHSGWGAPVEPPHSEASSSGRVVDEPAKENYNGWDDFPNTKAISNATHSQVHPAASISSTAPSAPPIPDVPD VNEGPIHYPSINLAPADFSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	0	1
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	2.0	0.7732
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	2.8	0.6831
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	6.8	0.7162
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	7.4	0.6952
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	11.4	0.6678
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	11.5	0.7057
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10029637 [exp]	13.6	0.6061
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	16.2	0.7030
AT3G60320			Protein of unknown function (D...		Lus10042910 [exp]	18.2	0.6168
AT2G43235			unknown protein		Lus10025487 [exp]	21.5	0.6092

Compare expression of checked genes

Lus10033896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.