Plant FIBer expression Database

Lus10033897 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003550
[exp]
78 / 4e-19 ND 51 / 1e-08
Lus10033358
[exp]
76 / 5e-18 ND 57 / 1e-09
Lus10033359
[exp]
71 / 5e-16 ND 54 / 6e-09
Lus10033898
[exp]
67 / 3e-15 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1)
Lus10033357
[exp]
65 / 4e-14 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1)
Lus10034811
[exp]
66 / 1e-13 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Lus10034812
[exp]
61 / 6e-13 ND 51 / 7e-09
Lus10033360
[exp]
54 / 6e-10 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1)
Lus10034813
[exp]
43 / 6e-06 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033897 pacid=23172795 polypeptide=Lus10033897 locus=Lus10033897.g ID=Lus10033897.BGIv1.0 annot-version=v1.0
ATGGCTGGGATGGAGGGCATGGGAGGCAAAGTTGCCTTGGGGATGCTTGGGAGTGGGGGCAGTGTAGTAATTTTAGGGAGCGTAGGTAATGTTGGCTGGG
GAAGACTAGGCATTGGTGGCAATGTTGGCAGTGTTGGCTTTGGGAGGGATGGAATTGTGGAGGGCATTGGTGGTAATGTAGGCAGGGTTGGCTGGGGGAA
AGCTGGGATCATGGTAGGGATCGGTGGCAACGTTGGCAACTGGAGGAGATTGCGAGCCGCTAGGCCAACATTGAAGCTCGAGAATGCAAAGGTGGCGATG
AAGAGACCAAGTACGAATCCGTTGAAAGAAGCCATGGTCACTTGGATATCGAAGCTGCTACTTCTGATTGTGTTGTAG
AA sequence
>Lus10033897 pacid=23172795 polypeptide=Lus10033897 locus=Lus10033897.g ID=Lus10033897.BGIv1.0 annot-version=v1.0
MAGMEGMGGKVALGMLGSGGSVVILGSVGNVGWGRLGIGGNVGSVGFGRDGIVEGIGGNVGRVGWGKAGIMVGIGGNVGNWRRLRAARPTLKLENAKVAM
KRPSTNPLKEAMVTWISKLLLLIVL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033897
[exp]
0 1
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Lus10019711
[exp]
1.0 0.9675
AT4G20820 FAD-binding Berberine family p... Lus10038436
[exp]
2.2 0.9477
AT5G61680 Pectin lyase-like superfamily ... Lus10034893
[exp]
3.3 0.9371
AT1G49960 Xanthine/uracil permease famil... Lus10033773
[exp]
3.5 0.9623
AT4G35790 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLI... Lus10001293
[exp]
4.1 0.9083
Lus10034812
[exp]
4.6 0.9617
AT1G24405 unknown protein Lus10037061
[exp]
4.9 0.9544
AT2G23540 GDSL-like Lipase/Acylhydrolase... Lus10016775
[exp]
6.5 0.9462
AT5G55180 O-Glycosyl hydrolases family 1... Lus10040600
[exp]
8.4 0.9384
AT3G11920 glutaredoxin-related (.1) Lus10029074
[exp]
8.5 0.9083

Lus10033897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.