Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08620 570 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G38950 483 / 2e-161 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 466 / 9e-152 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 454 / 1e-148 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 429 / 5e-139 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 178 / 3e-46 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 168 / 3e-43 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G04240 127 / 5e-30 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 108 / 7e-24 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003548 [exp] 1137 / 0 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10022024 [exp] 576 / 0 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 536 / 8e-169 AT3G04490 1382 / 0.0 unknown protein Lus10008063 [exp] 465 / 1e-151 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 199 / 1e-52 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10030988 [exp] 152 / 5e-38 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 152 / 6e-38 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10008531 [exp] 143 / 1e-34 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10019482 [exp] 126 / 2e-29 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G037300 [exp] 744 / 0 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 593 / 0 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 593 / 0 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.011G155100 [exp] 468 / 8e-152 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.001G440900 [exp] 470 / 2e-151 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.003G126600 [exp] 196 / 5e-52 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.003G096100 [exp] 160 / 2e-40 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 156 / 3e-39 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.015G089000 [exp] 136 / 9e-33 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 135 / 2e-32 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10033903 pacid=23172788 polypeptide=Lus10033903 locus=Lus10033903.g ID=Lus10033903.BGIv1.0 annot-version=v1.0 ATGCGGACAAAAAGTGCGGCTCGGAAGAGAGGATCTCTGAACCGTTTACAATCGCAACTTGGTGTTGCTTCGAGTACATCTTTTAAATTGAGGAAGGTTG AGCAAAGGCTTAGTTCTCTAGCTTCTGTAGCTGATGGAAAGGAGTCTTCGGTTGTTGATGCTTCAATGTTAAAGAGTTTGCTGATTCGACGGCCATGGAT AATCCACAACCAGAGTGATGGTGATCAAATACAAGAGGAATCCAACTCGGAACAAGTGGATAAAGAACCGTCTTCAAAAACTTGCCTACCGAAAGGAGTT GTTAGAGGATGTTCAGATTGTAGGGATTGCCTCAAGGTGATGGCAAGATGGCAACCCGAGAAAGGGAAGAAACAATTACTAGAAGATGCTCCTGTTTTCC ACCCCACTGAAGAGGAATTCAAAGATACACTCAAATATATTGCAAATGTACGTCCCAGGGCAGAACCGTATGGAATTTGTCGTATTGTCCCTCCTCCTTC GTGGCGTCCACCTTGCATGATTAGTGAGAAGAGTGTGTGGGAAGATTCACTATTTGAATCACTAGTTCAGCGGGTAGATGGATCGCTGGATCAGTGTTCA GACGATGTTTCTGATTGCTCTGTCATGGAAGGTTTTGAACCAGAACCTGGTCCACAATTTAGCCTTAAAACTTTCAAGAGATATTCAGATGATTTTGTCT CTCAGTACTTCACTATAGATGAAGTCTTGAACCCAAAGGTGGGTTCAAATATGCACGCAAAGCAGAGGGAACCATCTTTAGAGGATATTGAGGGTGAGTA CAGAAGAATTATTGAGAGTCCTACTGAAGAGATGGAGGTGATCTGCGGTGATAACCTGGATAGCCATGTTTTTGGCAGTGGATTTCCCAGCAGAAATCAA TTTTCAGAAAATGATAACAATCAGGCCTACGTGAACTCAGGCTGGAACTTGAAAAACACAGCTGTACTTCCAGATTCACTTCTGTCATTTGAGAACCCAA GTACTTCTCGCCTGTTACAGCCTCGACTGAGAGTAGGAATGTGCTTTTCTTCTCTTCCTTGGAAAAATAGAGAGCACCACTTGTATTCTCTCTCATACAT GCATCTCGGGGTCCCCAAAATCTGGTATGCTGTCCCTGGTAGTCATGGTTCAGTGTTTGAAGCTACTATAAAGAAGTACCATTCCGGGCTTGGAAGAAAA TATTCAAAGACTCAGCACTATAGGCGGCTATTGAAGTTGACGCTGGCTATGTTAAAGTCTGAAGGAATACCTGTCTATCGATGTGTTCAGAATCCTGGAG AGTTCGTTCTTGTCCTACCAAGATCACATTATTCAAATTTTGACAGTGGCTTTAATTGTGGTGAGAGTATTAATTTTGCTCCTCTTGAATGGTTACCAAA TGGGCAGAATGTTGTCGAATTCTATAGTGAAAAGGCAAGAAAGACGTCACTTTCCCAGGATAAGCTGTTGATAGGTGCAGCGGGAGAAGCTGTGAGGGTA CAATGGCTCAGCTTGCTTTCAAGTAAAAACACCCAAGTCAATATGACATGGAAAGCCGCCTCCGGGAAGGATGGGATCTTAGCGAAAGCTCTCGACTTAC GTATGAAGCTGGAGGCAAGCAGAAGGAAACACCTGTGTAATTCATTGCAGTCAAGAAAGATGGATAAAGAATTTGACGCCACGAGTAAAAAGGAATGTGC ATTATGTTACTATGATCTTCACTTCTCAGCAGCTTCATGTTCATGCAATCCCGATAGATACTCATGTCTAATTCATGCGAAGCAGCTCTGCTCTTGTCCT TGGAGTAGAAGGTTATTTCTGTACCGTTACAGGATGGATGAGTTAAGAGTTCTCCTTGAAGCCGTGGGAGGAAACCTGACTGCAATCTACAAATGGGCAC GTGACGATCTCAATCTATCGCTGCATTCCCTTGTCTCCGATAAGAGGCCAAAACAGTCAGATGGCAAAGAATGCAGCACCGAAGAATCTAAGGAGGAAAT TATAGAGCGGTTGTATGGAGGTCGAAGCAGCACTGCTTCTGACATCAAGGAAGAACTGAAAGCTCGGATGCTCCAACGAAAGTCCATGAATGAAAAGAAA CTGATGAAGGGTAAAGCCAGCTTACGACCACCCGTTACTTTTGCTTCTCAGTCGAGTTCTGTTGCTGATACCGTGCCTGTATTTGAAGTTTCCTCTGATA GCAGCAGTGAGTCATGCTCTTAA
AA sequence Show only first row Show all	>Lus10033903 pacid=23172788 polypeptide=Lus10033903 locus=Lus10033903.g ID=Lus10033903.BGIv1.0 annot-version=v1.0 MRTKSAARKRGSLNRLQSQLGVASSTSFKLRKVEQRLSSLASVADGKESSVVDASMLKSLLIRRPWIIHNQSDGDQIQEESNSEQVDKEPSSKTCLPKGV VRGCSDCRDCLKVMARWQPEKGKKQLLEDAPVFHPTEEEFKDTLKYIANVRPRAEPYGICRIVPPPSWRPPCMISEKSVWEDSLFESLVQRVDGSLDQCS DDVSDCSVMEGFEPEPGPQFSLKTFKRYSDDFVSQYFTIDEVLNPKVGSNMHAKQREPSLEDIEGEYRRIIESPTEEMEVICGDNLDSHVFGSGFPSRNQ FSENDNNQAYVNSGWNLKNTAVLPDSLLSFENPSTSRLLQPRLRVGMCFSSLPWKNREHHLYSLSYMHLGVPKIWYAVPGSHGSVFEATIKKYHSGLGRK YSKTQHYRRLLKLTLAMLKSEGIPVYRCVQNPGEFVLVLPRSHYSNFDSGFNCGESINFAPLEWLPNGQNVVEFYSEKARKTSLSQDKLLIGAAGEAVRV QWLSLLSSKNTQVNMTWKAASGKDGILAKALDLRMKLEASRRKHLCNSLQSRKMDKEFDATSKKECALCYYDLHFSAASCSCNPDRYSCLIHAKQLCSCP WSRRLFLYRYRMDELRVLLEAVGGNLTAIYKWARDDLNLSLHSLVSDKRPKQSDGKECSTEESKEEIIERLYGGRSSTASDIKEELKARMLQRKSMNEKK LMKGKASLRPPVTFASQSSSVADTVPVFEVSSDSSSESCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	0	1
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	1.7	0.8882
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10024927 [exp]	4.2	0.8513
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	4.9	0.8547
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	6.9	0.8528
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	6.9	0.7960
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	7.7	0.8624
AT3G07530			unknown protein		Lus10011289 [exp]	10.2	0.8027
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	10.6	0.8282
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	12.0	0.8298
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	12.3	0.8443

Compare expression of checked genes

Lus10033903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.