Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03900 306 / 1e-104 ABCI18, ATNAP4 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) AT3G58600 141 / 5e-40 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003544 [exp] 391 / 6e-138 AT1G03900 350 / 3e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Lus10000617 [exp] 142 / 3e-40 AT3G58600 324 / 2e-111 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Lus10000356 [exp] 137 / 5e-38 AT3G58600 311 / 2e-105 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226400 [exp] 328 / 2e-113 AT1G03900 322 / 3e-111 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.002G036400 [exp] 326 / 2e-112 AT1G03900 320 / 1e-110 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.013G117900 [exp] 150 / 7e-44 AT3G58600 331 / 3e-114 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Potri.019G089800 [exp] 147 / 2e-42 AT3G58600 337 / 1e-116 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF07933 [flax] [poplar] DUF1681 Protein of unknown function (DUF1681)
Representative CDS sequence Show only first row Show all	>Lus10033908 pacid=23172853 polypeptide=Lus10033908 locus=Lus10033908.g ID=Lus10033908.BGIv1.0 annot-version=v1.0 ATGTCATTCGAGGAAGATGAAGAATCGTTCGAGCACACACTCCTCGTCGTCAGGGAAGTGGCGATCTACAAGATCCCGCCGCGCTCCACATCCGGCGGCT ACAAGTGCGGTGAGTGGCTGCAGTCGGACAAGATCTGGACGGGTCGGCTCAGGGTAGTGTCGTGCAAGGATCGATGCGAGATCAGGCTGGAGGATCCCAA CTCCGGGGAGCTCTTCGCCGCCTGCTTCGTCCCGCCGGGACAGCGGGAGACGTCTGTGGAGCCAGTGCTCGACTCTTCTCGCTACTTCGTGCTCAAGATC GAGGACGGCTCCGGGAAGCACGCCTTCATCGGACTCGGGTTCGCCGAGCGGAACGAGGCGTTTGATTTCAACGTCGCGCTCTCCGATCACGACAAGTACG TCCGCAGGGAACACGAGAAGAAAGAGACTGGAGAGTCCGGCACCCAGGGCGGCGGCGACGCTCACATCGACATCCATCCCGCAGTGAATCATCGATTGAA GGAAGGGGAAACGATTCGGATAAGCGTAAAGCCTAAGCCGGCGACAAGTGGAACCGGAATGCTGTCAGCTGCGGGATTAGCCGGCGGAGCAACAGCTACC GGGAAGGCTAAAACTTTGAGCCTTGCCCCACCTCCAGCTGGAGCTGCAAAGACAAGGTCGCCGTTGCCGCCACCGCCGAATGATCCGGCGGTTGTTCGAA TAAGTACAGCTGGTGCCAGAGCAGTGAAGGACAGTAGCAACACTAGTACCAAGAGTTCTTCAGATTCATTATCAGATTTTTCACAGCTCGAGAGGAATCT CCCGCCGGCGGCGACGGTGGCTTCAACTGGGGCAGCAAAGACAAAAACTGCATCAGGATGGGCGGCTTTCTAA
AA sequence Show only first row Show all	>Lus10033908 pacid=23172853 polypeptide=Lus10033908 locus=Lus10033908.g ID=Lus10033908.BGIv1.0 annot-version=v1.0 MSFEEDEESFEHTLLVVREVAIYKIPPRSTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVPPGQRETSVEPVLDSSRYFVLKI EDGSGKHAFIGLGFAERNEAFDFNVALSDHDKYVRREHEKKETGESGTQGGGDAHIDIHPAVNHRLKEGETIRISVKPKPATSGTGMLSAAGLAGGATAT GKAKTLSLAPPPAGAAKTRSPLPPPPNDPAVVRISTAGARAVKDSSNTSTKSSSDSLSDFSQLERNLPPAATVASTGAAKTKTASGWAAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	0	1
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	2.0	0.9002
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	5.2	0.8943
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	5.6	0.9028
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	8.5	0.8584
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	10.2	0.8848
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	11.5	0.8595
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	11.6	0.8842
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	12.0	0.8751
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	13.5	0.8564
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	16.3	0.8629

Compare expression of checked genes

Lus10033908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.