Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18760 1443 / 0 CHR8 chromatin remodeling 8 (.1) AT5G63950 345 / 9e-101 CHR24 chromatin remodeling 24 (.1) AT2G25170 284 / 1e-78 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 275 / 2e-76 Homeotic gene regulator (.1) AT3G06010 267 / 1e-73 ATCHR12 Homeotic gene regulator (.1) AT3G19210 261 / 1e-72 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G28290 267 / 2e-72 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06400 262 / 3e-72 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT4G31900 259 / 5e-71 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G18620 257 / 2e-70 CHR17 chromatin remodeling factor17 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003543 [exp] 2088 / 0 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10037696 [exp] 358 / 3e-105 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10015690 [exp] 355 / 5e-104 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10041019 [exp] 291 / 6e-81 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 290 / 2e-80 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10034064 [exp] 271 / 5e-75 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 270 / 6e-75 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 265 / 2e-74 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 267 / 1e-72 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226500 [exp] 1444 / 0 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 351 / 1e-102 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 347 / 3e-101 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.017G012400 [exp] 285 / 5e-81 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.006G262200 [exp] 285 / 8e-79 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 285 / 1e-78 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.010G091200 [exp] 270 / 1e-74 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 267 / 5e-74 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 267 / 5e-74 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 262 / 5e-74 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033909 pacid=23172726 polypeptide=Lus10033909 locus=Lus10033909.g ID=Lus10033909.BGIv1.0 annot-version=v1.0 ATGGAGGAAATTGATGATAAGGTTTTGCTCAGCAGCTTGGGTGTTACTTCGGCGAATCCCGAGGACATTGAACGGATCATTCTTGCTGAGGCAACAACCC ATGGGGACAACAGTTCTGATGGAGGAAATAAAAGTAACGAGGAGCCTCAGAAGCGTTCAGAAAGCACCAATCCATTGTCAACGAGCCAGACCACACTCCA TAGTAAACTAAGGGCTGTTGAATATGAAATAGATGCTGTTGCATCCACTGTTGAACAGGAGAGGACCGCAAATACTGATCCCGACTATGAGGGTGCTTAT GATGGCACGTCAGGGGAAGAAGAGAAAGAAAAGGAAAAAGCTGGAGCTAGGATTTATTCAAATGGTTCAACTCTTCAGCAAGCATTAGCAGCTGATCGGC TAAGAAGTCTAAAGAGGACAAAAGCACAAATTGAAAAGGAATTATCCGATCTGCATCAGAATACAGTTGGCAGGGATGACAAGCATAAGAAATTGTTAGA AGATCTAGTAAAGGAGGAGTACATACCAAAAAGGAAATCAAACGTTCTAAAAGAAACTAAAAAACGTGAAGGGAAGCGTCAGAAGGCAGTTTCATTTTCT GATGATACTGATTTCGATGCTGCTCTGGATGCAGCATCTAGGGGATTTGTTGAAACAGAAAGGGATGAGTTAGTCAGGAAGGGAATTTTAACTCCTTTTC ACAAGCTTGAAGGGTTTGAACGGCGCCTACAACAACCAGGTCCATCTAGTGTATCTGAGAATGAAGAACTAGGTGATGATCTTATCTCTGAAAGACTTCT AAAGGCTGCTCAGTCAATATCTGAATCTATGAAAGCTCGTCCAACAACTAAGCTTCTTGATCCTGAACAATTGCCGAAGCTTGATGCACCAACTCTTCCC TTTCAGAGGCTGAAGACACCAGTGAAACTTCATGAGTCAGATAACAATGCAGCACGGAAGAAGAGGAAGCGTCCTTTGCCTGGCCAGAAATGGAGAAAAC GTATTTCACGAGAAGAAATCCCTTTGGATGATAGTGCTACACAGGCTCACTTGGTTACATCCAGCAATGAAGAAGAACTGCTGCAGGATTCTGAAGATGT TGAAGAGGCAGACCGTCCTTTTGTAACTCTTGAAGGAGGATTAAAAATTCCGGACGCAATTTTTAGCAAGCTATTTGATTATCAGAAAGTAGGGGTGCAA TGGATGTGGGAATTGCACTGCCAGAGAGCAGGTGGCATTATTGGAGATGAAATGGGCCTTGGTAAGACAATCCAAGTCTTGTCTTTCCTTGGAGCGTTGC ATTTTAGTAATATGTACAAGCCAAGCATTGTCATCTGTCCTGTTACACTATTGCGTCAATGGAGAAGAGAGGCATGCAAGTGGTATCCTAGGTTTCATGT GGAGCTACTACATGATTCTGCTCAGGATCCTTCTTCTAGAAAGAAAAGAGAAAAATCTAATGAGAGTGATGATGATAGTGAAGCTTCTTTAGACAGTGAT AATGAAGTAGTGATTTTATCATCTAATAAAGCCGACAAATGGGATTCATTAATTAACAGAGTTTTGAAGTCAGAGTCTGGGTTGCTCATTACCACTTATG AGCAACTTCGATTGCTCGGGGAGAAATTGCTTGACATTGAATGGGGATATGCAATTCTGGATGAAGGACATCGAATTCGGAATCCAAATGCTGAAGTCAC ACTAGTCTGCAAACAGCTTCAAACAATTCACCGGATAATAATGACAGGAGCACCGATTCAGAATAGGTTAAGCGAGTTATGGTCTTTGTTTGATTTTGTC TTTCCGGGCAAGTTGGGGGTCCTGCCAGTTTTTGAAGCAGAATTCGCTGTTCCAATTTCTGTTGGAGGTTATGCAAATGCTTCGCCACTACAAGTATCTA CAGCATATAGGTGCGCTGTGGTGTTACGTGACTTGATTATGCCATACTTGCTAAGGCGGATGAAAACAGATGTTAATGCTCATCTTCCTAAAAAGACGGA AAATGTTCTCTTTTGTAGCCTCACACCGGAGCAGCGATCTGTATATAGAGCATTTCTTGCTAGCACTGAGGTCGAGCAAATTCTCAATGGGAGTAGGAAT TCATTGGCTGGGATTGATGTAATGCGGAAGATATGTAACCACCCAGATCTACTGGAAAGGGAGCATTCTTCCAACAATCCAGACTATGGGAATCTTGAGC GCAGTGGAAAAATGAAAGTTGTTTCACAGGTGCTGAATGTTTGGAAGGAGCAGGGTCATCGTGTTCTTCTTTTCACTCAAACTCAGCAAATGCTTGACAT CCTTGAAAATTTCTTGGTTTCCGGTGACTACAGCTATCGGAGAATGGATGGTCTTACTCCTGTGAAGCAGAGGATGGCCTTGATTGACGAATTTAATGAT AGTGCTGATATCTTTGTTTTTATCTTAACAACAAGGGTTGGTGGGTTAGGGACGAATCTAACTGGTGCGGATAGGGTGATCATTTTCGACCCAGACTGGA ACCCATCAAATGATATGCAGGCTAGGGAACGAGCTTGGCGTGTTGGTCAGAAAAGGGATGTGGTTGTATATAGATTGATTACTCGTGGGACGATCGAGGA GAAGGTCTACCACAGGCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCGCAACAAAGAAGATTCTTTAAAGCTCGTGATATGAAAGAT CTTTTTATATTGAGTGATGATGTAGAAGGTGGATCAACTGAGACATCCAATATTTTCAGCCAGTTGACTGAAGATGTCAACATTGTTGGCGCGCAAATGG AAAAGCCAGACAGTAACAAACAGATTAGAAATGGTACAAGTGTTGGAGATGAAAGTAACAGCTTAGAGGTGAAACCAACCAGGAGGAAAGGAAAAGAGAA GGCTGATCATAAAGACAAAGAAATCGAAGAGGAAACCAACATCTTGAAGACTCTTTTCGATGCCAATGGCATACATAGTGCCATCGATCATGATGCCATT GTTAGTGCGAATGATGAACAGAAGGTGAGGATGGAGGAACAAGCATCTCAAGTTGCGCAAAGAGCAGCAGAGGCATTGCGCCAATCGAGGGTGATTCGCA GCCGTGAAAGTATTTCAGTCCCAACATGGACAGGAAAATCAGGCTGTGCCGGGGCGCCATCGACAGTTAGACAGAAGTTTGGATCTACTCTGAGCTCTCG GATTATCAAATCGGCTAATGACTCATCCAGCAATAAAACAAGCAGCAGCCTGAATGGTGTTGCTGCCGGGGCATCCGCTGGGAAGGCGTTGTCTTCTGCC GAATTACTTGCGAAAATTCGCGGAAACCAAGAAAGAGCAGCTGGTGCTGGAACATCTAGTAGAGGATCTCAAATTGCAACTAGCATCCAGCCGGAAGTGT TGATTAGACAGATGTGTACATTCATGCAACAAAGGGCTGGAAGATGCGATTCCTCAAGCATCGTGGAGCACTTCAAAGACAGGGTTCCGTCAAAGGATCT TCCGTTGTTTAAGAATCTTTTGAAAGAAATCGCGACGCTAAAGGACGACCCAAATGGGAAAGCATGGGTTCTGAAATCAGAATATCAGTAG
AA sequence Show only first row Show all	>Lus10033909 pacid=23172726 polypeptide=Lus10033909 locus=Lus10033909.g ID=Lus10033909.BGIv1.0 annot-version=v1.0 MEEIDDKVLLSSLGVTSANPEDIERIILAEATTHGDNSSDGGNKSNEEPQKRSESTNPLSTSQTTLHSKLRAVEYEIDAVASTVEQERTANTDPDYEGAY DGTSGEEEKEKEKAGARIYSNGSTLQQALAADRLRSLKRTKAQIEKELSDLHQNTVGRDDKHKKLLEDLVKEEYIPKRKSNVLKETKKREGKRQKAVSFS DDTDFDAALDAASRGFVETERDELVRKGILTPFHKLEGFERRLQQPGPSSVSENEELGDDLISERLLKAAQSISESMKARPTTKLLDPEQLPKLDAPTLP FQRLKTPVKLHESDNNAARKKRKRPLPGQKWRKRISREEIPLDDSATQAHLVTSSNEEELLQDSEDVEEADRPFVTLEGGLKIPDAIFSKLFDYQKVGVQ WMWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWRREACKWYPRFHVELLHDSAQDPSSRKKREKSNESDDDSEASLDSD NEVVILSSNKADKWDSLINRVLKSESGLLITTYEQLRLLGEKLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTIHRIIMTGAPIQNRLSELWSLFDFV FPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKTDVNAHLPKKTENVLFCSLTPEQRSVYRAFLASTEVEQILNGSRN SLAGIDVMRKICNHPDLLEREHSSNNPDYGNLERSGKMKVVSQVLNVWKEQGHRVLLFTQTQQMLDILENFLVSGDYSYRRMDGLTPVKQRMALIDEFND SADIFVFILTTRVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRVGQKRDVVVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKD LFILSDDVEGGSTETSNIFSQLTEDVNIVGAQMEKPDSNKQIRNGTSVGDESNSLEVKPTRRKGKEKADHKDKEIEEETNILKTLFDANGIHSAIDHDAI VSANDEQKVRMEEQASQVAQRAAEALRQSRVIRSRESISVPTWTGKSGCAGAPSTVRQKFGSTLSSRIIKSANDSSSNKTSSSLNGVAAGASAGKALSSA ELLAKIRGNQERAAGAGTSSRGSQIATSIQPEVLIRQMCTFMQQRAGRCDSSSIVEHFKDRVPSKDLPLFKNLLKEIATLKDDPNGKAWVLKSEYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10033909 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	6.9	0.7213
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	19.6	0.7013
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	26.8	0.7003
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	44.6	0.6920
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	45.1	0.6732
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	47.0	0.6722
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	53.4	0.6595
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	54.3	0.6699
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10015474 [exp]	55.5	0.6743
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10037528 [exp]	56.5	0.6719

Compare expression of checked genes

Lus10033909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.