Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20470 832 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 815 / 0 Protein kinase family protein (.1) AT3G23310 795 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 793 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G30640 702 / 0 Protein kinase family protein (.1) AT4G33080 638 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 627 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 615 / 0 Protein kinase family protein (.1.2) AT1G48490 270 / 5e-79 Protein kinase superfamily protein (.1.2.3) AT5G62310 268 / 2e-78 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003541 [exp] 1016 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10011814 [exp] 839 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 805 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10005707 [exp] 632 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10042650 [exp] 630 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10005470 [exp] 266 / 7e-79 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031332 [exp] 268 / 4e-78 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10027196 [exp] 264 / 1e-76 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 259 / 3e-75 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226700 [exp] 899 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 872 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 848 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 842 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 762 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G224800 [exp] 653 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 646 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G125800 [exp] 626 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 606 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.015G035600 [exp] 274 / 3e-80 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033911 pacid=23172847 polypeptide=Lus10033911 locus=Lus10033911.g ID=Lus10033911.BGIv1.0 annot-version=v1.0 ATGGAATCCAAGCGGAGCTGGTTACACAAGTTTCAGCCGCGGGATAAAATGAGGAGCACGACGAGGCGGAAGGAAGGCGGAGATGGCGGTGGCGACAGCA GGGATGATGGCCCAAGGGACGATGAGGAAGGAGGTATGTCCAACACGACCAAGCAGAGAGTTGTAGCGGCCAAACAGTATATCGAGAATCATTACAAGGA GCAGATGAAGAATCTCCAGGAGCGCAAGGAACGACGAATTTTGTTGGAGAAGAAGTTGGCTGATGCTGATGTATCCGAGGAGGATCAGAGCAACCTACTT AAATTCTTGGAACAGAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAAATGGGTGTTGATGACTTTGAACTTCTAACTATGATCGGCAAAGGCGCTT TCGGAGAGGTTAGAGTCTGCAGGGAAAAGACAACTGGTCATGTTTTTGCTATGAAGAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAAGTTGAGCA TGTGAAAGCCGAAAGGAACCTACTTGCAGAGGTTGACAGCAATTGTATAGTGAAGCTGTACTGCTCTTTCCAAGATGAGGAGTTCCTTTACCTTATTATG GAATATCTGCCTGGTGGAGACGTTATGACATTGCTTATGAGAAAAGACACCCTGACGGATTATGAAGCTCAATTCTATGTTGCAGAAACAGTTTTGGCTA TTGAGTCTATTCACAAACATAACTACATTCATAGGGACATCAAGCCCGATAACTTACTTCTGGATAGATATGGTCACTTGAGACTGTCTGATTTTGGGCT GTGTAAACCATTAGACTGCAGTACCATTCAAGAAGGGGATTTTGCAGTGGCCAATAGCCCTAACACGTCTACGCAGAGTGAAGATCGTGCAGGTGCTCCA AAGCGCACTCAACAGGAACAATTACAACATTGGCAGAAGAACAGAAGGACCTTGGCGTATTCCACTGTTGGTACACCTGACTACATTGCTCCAGAAGTAC TTTTGAAGAAAGGTTATGGAATGGAGTGTGACTGGTGGTCGCTTGGAGCAATCATGTACGAAATGCTAGTGGGCTATCCGCCTTTTTATTCAGATGATCC AATGTCAACATGTAGAAAGATAGTAAACTGGAAAACTCATTTGAAATTCCCGGAAGAAGCGAAATTATCTCCAGAAGCAAAGGATCTCATCAACAACCTC TTGTGCAATGTAAACCAGAGGTTGGGGACAAATGGTGCTGCTGAAATAAAGGAACATCCATTCTTCAAAGATATTGAATGGGAACATATTTATGATATAG AAGCTGCTTTTATCCCAGAGGTGAATGATGAGCTGGACACACAAAATTTTGAAAAGTTCGAAGAGTCCGAACACCATCCTCAAACATCCTCAAAAACTGG TCCATGGAGAAAGATGATTTCTTCAAAAGACCTACATTTTGTGGGATACACATACAAAAACTTCGAAATTGTGAATGATTATCAAGTACCTGGAATGGCT GAGTTGAAGAAGAAAGAAACAAAGCAAAAGAGGCCGTCTGTGAAGTCGCTTTTTGGTAAGCTAACGTCTGATGCCCATTTTGGATTTGTTGAAGATAGTG ATTCCTGCTTAACAATAGTTATTTTAAAAACCAATGTCTCAAGGGTGCTTGCTAGCAGTAGTACCAGTTTTGGCCTGCCAGTCTTTGTCGATTATCTATA A
AA sequence Show only first row Show all	>Lus10033911 pacid=23172847 polypeptide=Lus10033911 locus=Lus10033911.g ID=Lus10033911.BGIv1.0 annot-version=v1.0 MESKRSWLHKFQPRDKMRSTTRRKEGGDGGGDSRDDGPRDDEEGGMSNTTKQRVVAAKQYIENHYKEQMKNLQERKERRILLEKKLADADVSEEDQSNLL KFLEQKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVFAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLIM EYLPGGDVMTLLMRKDTLTDYEAQFYVAETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTIQEGDFAVANSPNTSTQSEDRAGAP KRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLINNL LCNVNQRLGTNGAAEIKEHPFFKDIEWEHIYDIEAAFIPEVNDELDTQNFEKFEESEHHPQTSSKTGPWRKMISSKDLHFVGYTYKNFEIVNDYQVPGMA ELKKKETKQKRPSVKSLFGKLTSDAHFGFVEDSDSCLTIVILKTNVSRVLASSSTSFGLPVFVDYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	2.4	0.9570
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	2.4	0.9553
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	3.0	0.9365
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	4.5	0.9405
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	4.6	0.9448
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	8.5	0.9305
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	8.8	0.9315
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	9.5	0.9119
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10018088 [exp]	11.3	0.9016
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	14.1	0.9393

Compare expression of checked genes

Lus10033911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.