Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28540 659 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT3G23340 652 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 652 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT5G43320 626 / 0 CKL8 casein kinase I-like 8 (.1) AT1G03930 614 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT1G04440 602 / 0 CKL13 casein kinase like 13 (.1) AT5G44100 592 / 0 CKL7 casein kinase I-like 7 (.1) AT4G26100 548 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 547 / 0 CKL12 casein kinase I-like 12 (.1) AT1G72710 545 / 0 CKL2 casein kinase 1-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024916 [exp] 825 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10003539 [exp] 815 / 0 AT4G28540 555 / 0.0 casein kinase I-like 6 (.1) Lus10022908 [exp] 791 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 640 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 633 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 603 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 600 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 597 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 587 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226900 [exp] 756 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 751 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 663 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.010G070400 [exp] 658 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 609 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.001G197600 [exp] 561 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 556 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 556 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 551 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 496 / 1e-174 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033913 pacid=23172816 polypeptide=Lus10033913 locus=Lus10033913.g ID=Lus10033913.BGIv1.0 annot-version=v1.0 ATGGACAAGTTGAAGGTTGACCAGGTCGTTGGTGGCAAATTCAAACTTGGAAGGAAGATTGGGAGTGGATCATTTGGAGAGCTCTATCTGGGTGTGAATG TACAAACTGGTGAAGAAGTTGCGGTTAAGCTGGAATCTGTGAAGACCAAGCATCCTCAGCTTCTGTATGAGTCAAAATTGTATATGCTTCTCCAAGGAGG GACTGGAATTCCCCACCTCAAGTGGTTTGGAGTTGAGGCGGACTACAATTGCATGGTTATTGATCTTCTTGGACCAAGTATGGAAGATCTATTCAACTAT TGTAACAGGAAGTTTACTCTGAAAACAGTGCTAATGCTTGCTGATCAATTGATTAACCGAGTTGAATACATGCATTCAAGAGGATTTCTTCACCGTGACA TTAAGCCAGACAACTTTTTGATGGGCCTCGGTCGCAAAGCCAATCAGGTTTACGTAATTGATTATGGGCTTGCAAAGAAATACAGAGATCTTCAGACTCA TAAACACATCCCATACAGAGAGAATAAGAACCTCACAGGCACTGCTCGCTATGCAAGTGTGAACACCCACCTTGGAATTGAGCAAAGCAGAAGGGACGAT TTGGAATCTCTTGGTTATGTGCTGATGTATTTCATCCGAGGAAGCCTCCCCTGGCAAGGATTGAAGGCCGGCACAAAAAAACAGAAATACGACAAGATCA GTGAAAAGAAAGTTCAAACTTCCATAGAGTCGCTTTGTAAATCATATCCATCCGAGTTTGTATCGTACTTCCATTATTGCCGTTCATTGCGGTTTGAAGA CAAACCAGACTATTCATATTTGAAGAGGCTTTTCCGCGACTTATTTATTCGGGAAGGTTATCAATTTGACTATGTTTTTGATTGGACTGCCTTGAAGTAT CCTCAAGTTGGTTCTAGCTCTAGAGCACGAGTAAGTGGGAAACCGAGTCATGCTCTTGCGGGACCATCTGCAGAAAGACCGCCTGAGAGAGTCTCCGTTG GAAAAGAGATCCGCGAGAGATTCTCAGGCGCAGTCGAGGCTTTCTCGACCAGAAGAATCACAAGTTCTAGTCCACTTGAAAGTTCCAGAACCCGGACAAA TGAGACACAGCTGGAGACAGAGAAAGGGCGCAGCACGTCTAGGCATGGTAGCAACTCGAGACGAGCGATACTCCCTAATGGGAGGCCAAGTTCGTCAGGT GACCATGGTGACAGCCGCATGAAGAGAACACACAACGCTGCTGGCCAAATGACTTCTTCGACACAGCAGAGGATTTTACCGGTGTACGAACCCATAAAAT CTTCCGGTGCACGAGCAGCAGCAGCTGCCGGTGTGAAATCTCGCGAGGAAAGTCTAAAGAGCTTCGAGTTCCTCACACTTAATCGACGATGA
AA sequence Show only first row Show all	>Lus10033913 pacid=23172816 polypeptide=Lus10033913 locus=Lus10033913.g ID=Lus10033913.BGIv1.0 annot-version=v1.0 MDKLKVDQVVGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPHLKWFGVEADYNCMVIDLLGPSMEDLFNY CNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDD LESLGYVLMYFIRGSLPWQGLKAGTKKQKYDKISEKKVQTSIESLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTALKY PQVGSSSRARVSGKPSHALAGPSAERPPERVSVGKEIRERFSGAVEAFSTRRITSSSPLESSRTRTNETQLETEKGRSTSRHGSNSRRAILPNGRPSSSG DHGDSRMKRTHNAAGQMTSSTQQRILPVYEPIKSSGARAAAAAGVKSREESLKSFEFLTLNRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	0	1
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	5.8	0.8416
AT4G22320			unknown protein		Lus10021308 [exp]	7.0	0.8061
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	8.9	0.8277
AT2G41150			unknown protein		Lus10022403 [exp]	10.8	0.8184
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	11.5	0.7586
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	19.9	0.7946
AT2G42760			unknown protein		Lus10005429 [exp]	21.0	0.8144
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	21.8	0.7169
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	25.7	0.7245
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	26.5	0.7791

Compare expression of checked genes

Lus10033913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.