Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57590 941 / 0 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) AT1G80600 69 / 4e-12 WIN1 HOPW1-1-interacting 1 (.1) AT3G22200 69 / 9e-12 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G46180 49 / 1e-05 DELTA-OAT ornithine-delta-aminotransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003630 [exp] 1402 / 0 AT5G57590 969 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Lus10008025 [exp] 72 / 1e-12 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10003810 [exp] 67 / 3e-11 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 67 / 3e-11 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031196 [exp] 64 / 2e-10 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 52 / 2e-06 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 50 / 7e-06 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170400 [exp] 978 / 0 AT5G57590 1091 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Potri.005G095800 [exp] 69 / 6e-12 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G020900 [exp] 69 / 7e-12 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 66 / 6e-11 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.016G018500 [exp] 66 / 6e-11 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.007G085600 [exp] 48 / 2e-05 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.011G082800 [exp] 48 / 3e-05 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10033915 pacid=23172746 polypeptide=Lus10033915 locus=Lus10033915.g ID=Lus10033915.BGIv1.0 annot-version=v1.0 ATGCTTCCTTGCTCGCGCTTCCTCTTCTGCCACCATCACAGTCTCCCTCTCCGCCTCCTGCAACGGAGACTCCTCTCTAGCTCCTCCTCCTCCTCGCCGC CTCACGTCCCACTGTCACACCCAACTTACATGATCTGGGCCTCCAACACCTCCCTCGGCAAAACTCTCGTCTCCACTGGTCTAGCTTCCTCCTTCCTCCT CTCGCACTTCTCCCCCGCAGAGCATCGCAAGCTCCTCTATCTCAAACCAGTTCAAACTGGATTTCCGTCTGACTCGGACTCCCATTTCGTCTTCTCCAGA CTTTGCTCTCTTGCTTCCCGGCGATTTGCAGCAGATCCTCGTTTCTCCTTCTCCGCCTTCAATTCCGTTCTTCAATCCTCTCTTCCCGCTGCCAAGGGAC AAAATCTCACCAGCGAGAAGCAATGCAGCTTATCAAGGGCAACGACTACGGGTTCTGCTGAGTTAGTCTGTGAGACGTTGTATGCATGGAAGGAAGCAGT TTCTCCACATTTGGCCGCAGGGAGAGAGAATTTCACTGTCTCGGATTCGTCATTGGTGAAGGAATTGGAGAAGCATCTGACGGCTTCTCTAGATGGGGAG TTCGTGAAGGAAAGTGAACGAGCTTTTTGCATTGTTGAGACCGCTGGAGGTGTAGCTAGCCCAGGTCCTTCTGGGTCCTTGCAGTGTGATTTGTATAGGC CATTCCGTTTACCAGGGATTCTTGTGGGAGATGGACGACTTGGTGGCATATCTGGAACTATTTCAGCTTATGAGAGTCTGATACTTCGAGGATATGATAT TGTGGCAGTTGTGCTTGAAGATCATGGCCTTGTTAATGAGGATTCATTAAGATCATACTTTAGAAACAGGGTACCTATACTTGTGTTGCCATCCATACCA CTGGATATGTCAAATGACTTGGTGGAATGGTTTAGGGAATCGGACAAAGTATTTGATTCCCTTCAGGAAATAATGCTGTCGGCATTTGAAGAAAGAATCC AGAGATTGAATGACATGCCAAAGAAAGCAGGCGATACTTTATGGTGGCCGTTTACTCAGCACAAGCTTGTACCTGAAGCAAGTGTAACCGTCATTGATTC ACGATTAGGCGAGAACTTTGCAGTTTATAAGGCTCAAAATAATGGATCCCTAACTCAACAATTTGATGCATGTGCTAGCTGGTGGACTCAAGGGCCTGAT GCTGCACTGCAGATTGAGCTTGCTAGAGAATTGGGCTACGCTGCTGGACGATTTGGTCATGTGATGTTCCCAGAGAATGTTTATGAGCCAGCCTTAGAAT GCGCACAGCTGCTACTTGAGAGTGTAGGCAAAGGTTGGGCTTCAAGGGTTTTCTTTTCTGATAACGGATCAACAGCAATTGAAATTGCCCTTAAAATGGC ATTCCGCAAGTTCTGCTTTGACAATGACATGCTTTCAGATGTTGACAGTAGTAATGTAACTGAAAAATCCTTTATTCTAAAGGTATTAGCTCTTAAAGGC TCGTACCATGGTGACACATTGGGTGCAATGGAAGCACAAGCACCATCTTCATATACAGGCTTCATCCAACAACCATGGTATGCAGTGCCCATGCTTTGCT TCTGGGGAGAGTACAGTGGAAGAGGTTGTTTTATGGATCCACCTGCTGTCTCTATGTGCGACAATATATGGATTGTTACCTTGCCATCAACGATGGATCT GAAGAATCTAAATCCTAGGGAGACAATTGTACAAGCAGCCGGAGGTATGCTCCTGATTGATCCACTTTTCCAGCGGGTCCTTGTCAATGAATGCCGAAGG AGAAACATTCCAGTTATATTTGATGAAGTGTTTACTGGTTTCTGGCGTCTTGGGGTTGAGACTGCAGCACAACTGCTTGGATGTGTACCGGACATTTCCT GCTTTGCAAAGCTGATGACTGGTGGGGTTATACCTTTAGCGGCTACATTGGCCACAAAAGCAGTCTTCGATGTGTTCACTAGCGATTCAAAGGTATTGCA TGACACATCCTTGCTTGGTATTGATGATACTGACTTAGATGGTCACTTGTTGAATGCCCTCTTGCACGGACACTCTTACTCTGCACATGCTATGGGATGC ACAGCAGCTGCTAAAGCCATCAAATGGTTTAAAGATCCTCAGACAAATGTTAATATAACTTCTCAAGGGTTGCTTTGTGAGATGTGGGATGCCGAGCTGG TGGCATCCATATCATCCCATCATTCAGTCCAGAGAGTGATCGTATTGGGAACTGTATTTGTTGTAGAATTACGAGCAGAAGGGGACAATGCTGGGTATGC GTCAACGTATGCAAGGGAACTTGTAATGAAGATGAGGGAAGATGGTGTGTACATGAGGCCGCTTGGTAATGTCATCTATCTCATGTCTACGCCTTTGACA AACCCCCTTACTTGCAAGGATTTGCTCCTCAAGCTTTTCACCAGACTGCAACAATTCCGACACTAA
AA sequence Show only first row Show all	>Lus10033915 pacid=23172746 polypeptide=Lus10033915 locus=Lus10033915.g ID=Lus10033915.BGIv1.0 annot-version=v1.0 MLPCSRFLFCHHHSLPLRLLQRRLLSSSSSSSPPHVPLSHPTYMIWASNTSLGKTLVSTGLASSFLLSHFSPAEHRKLLYLKPVQTGFPSDSDSHFVFSR LCSLASRRFAADPRFSFSAFNSVLQSSLPAAKGQNLTSEKQCSLSRATTTGSAELVCETLYAWKEAVSPHLAAGRENFTVSDSSLVKELEKHLTASLDGE FVKESERAFCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLILRGYDIVAVVLEDHGLVNEDSLRSYFRNRVPILVLPSIP LDMSNDLVEWFRESDKVFDSLQEIMLSAFEERIQRLNDMPKKAGDTLWWPFTQHKLVPEASVTVIDSRLGENFAVYKAQNNGSLTQQFDACASWWTQGPD AALQIELARELGYAAGRFGHVMFPENVYEPALECAQLLLESVGKGWASRVFFSDNGSTAIEIALKMAFRKFCFDNDMLSDVDSSNVTEKSFILKVLALKG SYHGDTLGAMEAQAPSSYTGFIQQPWYAVPMLCFWGEYSGRGCFMDPPAVSMCDNIWIVTLPSTMDLKNLNPRETIVQAAGGMLLIDPLFQRVLVNECRR RNIPVIFDEVFTGFWRLGVETAAQLLGCVPDISCFAKLMTGGVIPLAATLATKAVFDVFTSDSKVLHDTSLLGIDDTDLDGHLLNALLHGHSYSAHAMGC TAAAKAIKWFKDPQTNVNITSQGLLCEMWDAELVASISSHHSVQRVIVLGTVFVVELRAEGDNAGYASTYARELVMKMREDGVYMRPLGNVIYLMSTPLT NPLTCKDLLLKLFTRLQQFRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10033915 [exp]	0	1
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	5.8	0.9486
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	6.6	0.9522
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	7.2	0.9284
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	8.8	0.9483
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	9.2	0.9439
AT4G31880			unknown protein		Lus10018332 [exp]	14.1	0.9337
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	14.8	0.9478
AT2G44640			unknown protein		Lus10043347 [exp]	17.6	0.9167
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	17.7	0.9411
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	18.6	0.9157

Compare expression of checked genes

Lus10033915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.