Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36210 388 / 5e-127 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) AT2G18100 374 / 1e-121 Protein of unknown function (DUF726) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024307 [exp] 788 / 0 AT4G36210 608 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10033181 [exp] 659 / 0 AT4G36210 605 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10028363 [exp] 412 / 4e-136 AT4G36210 813 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10041814 [exp] 363 / 2e-117 AT4G36210 752 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10010626 [exp] 290 / 2e-91 AT4G36210 376 / 2e-125 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016100 [exp] 360 / 3e-116 AT4G36210 657 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05277 [flax] [poplar] DUF726 Protein of unknown function (DUF726)
Representative CDS sequence Show only first row Show all	>Lus10033916 pacid=23172866 polypeptide=Lus10033916 locus=Lus10033916.g ID=Lus10033916.BGIv1.0 annot-version=v1.0 ATGCAAGAGCAGCTCTTTTCGCATTGGCGCTTTTCCAATCTCAATTCTCAAACCCACCAGACTATCCCTTCCACTCCACCACTCTCTCTTAATCAGGAGC CCATCGGCCATGGCAAAGTCACTTCCATAAAAACTTCTTCCTCTGTTTCTGGTAAACCTCAGTTATGGATCCACCAAGACTCCGGCTTACTTCTCCCCAT TTTCAGCTTCCTGGGTGTGGAGCTTCAAGCCTGGAATGGCCTCAAGGAAACAGCTGGCTCTTCTGCCCAATTGAGACATCATATTGGATCGCATATGAAA TTGTTGTCAGAGGAGAAGGATGGGTCAACAGAGAGACTAGAAAAGGAACAAGCTCTTACAAAGAACGTTGATGCCACTGCTCAGACCATGGATGTCTCCC CTGCTGATTCAAGTACGGTGGGAGTGGAGGGGGCGGAGAATGCAAATGCGGTGGTGAAGACAGGGATGGTGGTTGGTGCTGCGGCGGACACGGACATGGA AGAGGTAAAGATGTTGAGTTACCAGAGGAAAATTACGGTGCTTTATGAGCTGCTTTCAGCTTCCCTTGCTAACAGCGTCAAAGAGAACAGCACTTTCTTC AAGCAAAGAGAAGGCTGCGATTCTCGCCACAGAGTTGCTTTGAGGTTGTTGTCTTCATGGCTTGCTGTCCAATGGACCGAAATGGAGGCCATGGAGGCAA TGGTATGTTGCTCTCTCATGGAGTTGCTATCAAAGGCAAGTGAAGAGGACAAGCAGCTTTCCGAAGGCACCTGGGACAAATGCAAGCGTGGTGGCATGGT TGGCGCCGCTGCTTTGACCGGCAGAGCAGTTTTGGCCCTCACTGGCGGACTTGCTGCTCCGGCAATCGCACATGGAGTCCTTGCACTTGCCCCTGCCGTT GGTGGTGCTCTTGCTAGTACTACTGGATCTGTTGCTGTTGCTGCATCATTTGGAGGGATGTCTAAAACACTTTGGGCCAATCCTAAATCACAGTTTGCTA CCTACCCAGCTGCCGGAATGGGCCTAACGGGGAGCGAAATGGCGAAAAGAGTTGGAGGACTCGAGGAATTTGAGATTGAAGCCCATGGTGAAAGCGGTAA CCAAGGGGTCGATCATAACAACACATTTACTCAATCATCTTGGCAGCGATTGGCAGTGGAGATACTCGTCTCAGGATACATTCTTAATGAATCCGATTTC TTAAAGCCATGGGATGCCATAACTGATAACATGGAAAGAGGTTGCAATGGAGATGACGAAACAAGGTACTATGTTGACAGTATTGAGCACCTTAGTTGTA GCATTAGCTGTACCAGCAGCGTTGCGCTTGGAGCTACCGAACTCATTGACACCAAATGGGCAGTCGCTATTAGCAGAGCTGATAAAGCAGGACAACTGCT TGCTGAGGTGTTGATGCAAGGAATGCACGGTAACAGGCAACTACGTTACTTACCTGTGACACTGATTGGCAGCTCACTTGGGGCACGAGCAATTTTCAAG TGTCTGCAGGATTTGGCTGAATCTGGATTGGTGGAAAGGGTCGTTCTTCTTGGCGCACCAATTCCAATCCAAGGTGAAAAATGGCAAGTTGCCAGAAAGA TGGTGGCTGGCAGATTTGTGAATATATATTCAACTAGTGATTGGACGCTGGGAGTTACATTCCGTGCGAGTCTGGTTTCCACTGGATTGACAGGAATTCA GGCCGTGGATGTTCCTGGAATTGAGAACGTACGTACATAA
AA sequence Show only first row Show all	>Lus10033916 pacid=23172866 polypeptide=Lus10033916 locus=Lus10033916.g ID=Lus10033916.BGIv1.0 annot-version=v1.0 MQEQLFSHWRFSNLNSQTHQTIPSTPPLSLNQEPIGHGKVTSIKTSSSVSGKPQLWIHQDSGLLLPIFSFLGVELQAWNGLKETAGSSAQLRHHIGSHMK LLSEEKDGSTERLEKEQALTKNVDATAQTMDVSPADSSTVGVEGAENANAVVKTGMVVGAAADTDMEEVKMLSYQRKITVLYELLSASLANSVKENSTFF KQREGCDSRHRVALRLLSSWLAVQWTEMEAMEAMVCCSLMELLSKASEEDKQLSEGTWDKCKRGGMVGAAALTGRAVLALTGGLAAPAIAHGVLALAPAV GGALASTTGSVAVAASFGGMSKTLWANPKSQFATYPAAGMGLTGSEMAKRVGGLEEFEIEAHGESGNQGVDHNNTFTQSSWQRLAVEILVSGYILNESDF LKPWDAITDNMERGCNGDDETRYYVDSIEHLSCSISCTSSVALGATELIDTKWAVAISRADKAGQLLAEVLMQGMHGNRQLRYLPVTLIGSSLGARAIFK CLQDLAESGLVERVVLLGAPIPIQGEKWQVARKMVAGRFVNIYSTSDWTLGVTFRASLVSTGLTGIQAVDVPGIENVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18100			Protein of unknown function (D...		Lus10033916 [exp]	0	1
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10025192 [exp]	4.0	0.8524
AT5G36000			unknown protein		Lus10004013 [exp]	9.8	0.8822
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	14.3	0.8768
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	17.5	0.8767
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	20.4	0.8761
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	21.4	0.8713
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	25.1	0.8695
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	25.7	0.8692
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	25.8	0.8643
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	33.1	0.8642

Compare expression of checked genes

Lus10033916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.