Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22270 442 / 2e-153 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT3G20300 442 / 3e-153 Protein of unknown function (DUF3537) (.1) AT4G03820 411 / 3e-141 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT1G50630 410 / 2e-140 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT1G67570 216 / 6e-65 Protein of unknown function (DUF3537) (.1) AT2G21080 202 / 2e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024308 [exp] 742 / 0 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 443 / 1e-153 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 450 / 3e-153 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 241 / 6e-75 AT2G21080 450 / 5e-157 unknown protein Lus10011371 [exp] 218 / 1e-65 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 188 / 8e-55 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 168 / 5e-47 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 155 / 7e-43 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 57 / 4e-10 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356200 [exp] 447 / 3e-155 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 248 / 2e-77 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 236 / 1e-72 AT2G21080 447 / 9e-156 unknown protein Potri.012G094700 [exp] 217 / 1e-65 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 206 / 1e-61 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 204 / 1e-60 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10033919 pacid=23172829 polypeptide=Lus10033919 locus=Lus10033919.g ID=Lus10033919.BGIv1.0 annot-version=v1.0 ATGGAAAATGATGCAGCCGCTGCTTCCCTCATCCTTATACCCAAAGCTATTAAATTCTCTTCTGAAGGAGGAGGAGAAGAAGGAGAAGCGATCGAATTCA AGAGCCTGAGATTGTGCTTTAACTGCCTCTGTCTCAACGATCAATCCAACATATGGGCTGCCAGTTTGTCCTGGTCGGTCTTCTTCATGCTCGCCTTTGG CGTCCCTACAGTTTCCCACTTCCTTTTCTTGTGCGCTGATTGTGATCAACAACATCAGAGGCCTTACGACACCGTCGTCCAGCTCTCTCTTTCTGTTTGC GCTGTCATTTCTTTTCTCTGCCTTTCTCATTGGTCTCGCAAGTACGGCTTCAGGAGGTTTCTCTTTGTCGACAAATTGGATGGCGAGAGTCTGCAGATTC GACGAGGATATCAGCAGGAGCTCAAGCGATCAATGGCGCTTCTCTGCACATTTGTGCTTCCCTGTTTCGCGGTGGAGTCTGCATATAGAATATGGTGGTA CGCTACAGGAGCCTTTGAGATACCCTATTTCGAGAACATGTACGCCAGCGATACCATCTTTTGCCTCTTGCAGCTGGCCTCCTGGGTTTACCGCATCTCC ATTTTCATCCTGGTTTGCATTCTCTACCGTCTCATCTGCCATCTCCAAATACTCAGACTGCAGGAATTTGCAGAGCTGTTTCAGAGTGAAACGGAAGTTG GTTCCATCTTGAAAGAGCATCTTAGAACCAGAAGGAATCTCAGGATTATCAGCCATCGGTTCCGAAGGTTCATCCTATTGTCTCTGCTCTTGGTCACCGC AAGTCAATTGATGTGCTTGCTCGTCACTACTAGGTCCACTGCTACTAACAACATCTACGAGGCTGGAGAGCTCCTGCTCTGCTCTATAAATCTGGTGATA GGACTATTCATATGCCTGAGAAGTGCGACAAAGATAACCCACAAAGCACAGGCCATAACAAGTCTTGCGGCGAAGTGGCATGTCTGTGCCACGATCAACT CATCGTATGACCATGACATGGGCGATGGTGAGACTCCAACTAGCCAACCAATTGGTGATTGTAATCAGGTTCACCCCGTCAATATAGAGTGGGTTCTGGA TGAAGAGGAGGATGGTGAAGAAGAAGAAGAAGATGGAAACTCCAACAGCTCGAATATGGTGCCCATATTTGCACATACCATGTCTTTCCAAAAGAGACAG GCACTAGTGACGTACCTAGAGAACAACAAGGCAGGAATGACGGTGTTCGGATTTATGATGGATAGAACATGGCTTCACACCATATTTGGTGTTGAATTAG CGCTTCTCTTATGGCTCCTTAATAAGACTATAGTGAGTTGGACTTGA
AA sequence Show only first row Show all	>Lus10033919 pacid=23172829 polypeptide=Lus10033919 locus=Lus10033919.g ID=Lus10033919.BGIv1.0 annot-version=v1.0 MENDAAAASLILIPKAIKFSSEGGGEEGEAIEFKSLRLCFNCLCLNDQSNIWAASLSWSVFFMLAFGVPTVSHFLFLCADCDQQHQRPYDTVVQLSLSVC AVISFLCLSHWSRKYGFRRFLFVDKLDGESLQIRRGYQQELKRSMALLCTFVLPCFAVESAYRIWWYATGAFEIPYFENMYASDTIFCLLQLASWVYRIS IFILVCILYRLICHLQILRLQEFAELFQSETEVGSILKEHLRTRRNLRIISHRFRRFILLSLLLVTASQLMCLLVTTRSTATNNIYEAGELLLCSINLVI GLFICLRSATKITHKAQAITSLAAKWHVCATINSSYDHDMGDGETPTSQPIGDCNQVHPVNIEWVLDEEEDGEEEEEDGNSNSSNMVPIFAHTMSFQKRQ ALVTYLENNKAGMTVFGFMMDRTWLHTIFGVELALLLWLLNKTIVSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	0	1
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	2.0	0.7980
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	3.0	0.8194
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	5.7	0.7626
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	7.3	0.7406
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	8.5	0.7618
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	12.8	0.7601
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	15.9	0.7307
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	17.7	0.6834
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	20.2	0.7099
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	22.4	0.6972

Compare expression of checked genes

Lus10033919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.