Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66310 540 / 4e-176 ATP binding microtubule motor family protein (.1) AT2G21300 534 / 4e-176 ATP binding microtubule motor family protein (.1.2) AT3G51150 536 / 8e-175 ATP binding microtubule motor family protein (.1.2) AT4G38950 527 / 5e-174 ATP binding microtubule motor family protein (.1.2) AT4G24170 519 / 8e-169 ATP binding microtubule motor family protein (.1) AT1G18370 431 / 2e-135 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 412 / 1e-128 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 349 / 5e-104 ATP binding microtubule motor family protein (.1) AT3G10180 303 / 2e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 260 / 8e-74 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010624 [exp] 1382 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 774 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015449 [exp] 520 / 2e-177 AT5G42490 200 / 2e-56 ATP binding microtubule motor family protein (.1) Lus10031086 [exp] 533 / 3e-175 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 533 / 3e-175 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 526 / 4e-170 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 525 / 7e-170 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 436 / 9e-138 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 427 / 3e-134 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027600 [exp] 895 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 724 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 560 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 546 / 6e-179 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 541 / 4e-177 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 442 / 6e-140 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 436 / 2e-137 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 421 / 7e-132 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 290 / 3e-82 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 268 / 1e-76 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10033920 pacid=23172758 polypeptide=Lus10033920 locus=Lus10033920.g ID=Lus10033920.BGIv1.0 annot-version=v1.0 ATGAGTATGGTGAGCTCCACAATACGGGGGAGAGGAGACCGTCGGAGCGCGGTTGGATCATCATGGGGTGGGGACGAGTCCGTGATGGGAGACTCTGTTG CCGGTGGCTCTGAATCGGAGAAGATTCACGTCTCCATTAGGCTAAGGCCACTGAACGACAAGGAAACATCCAAAAACGATGACGTCTCCGATTGGGAATG CATCAGCTCTACCACCCTCATCTTCAAATCTTCAATTCCTGATCGCTCCATGTTGCCCTCTGCTTTCACTTTCGATAGAGTGTTTGGAGCGGACAGCAGC ACTAAGCAAGTATATGAAGAGGTGGCGAAAGAAGTGGCTCTCTCCGTCCTCAGCGGCGTCAATGCCAGCATTTTTGCTTACGGGCAAACAAGTAGCGGCA AGACTTATACTATGAGCGGAGTCACAGAGTACGCAATCGCTGATATATTTGACTACATATACCAAAACCAAGAAAGAGAGTTTGTATTGAAATTCTCAGC CCTGGAGATCTATAATGAAGCAGTAAGAGACCTTCTAAGCTCAGATCCTAGTCCTCTTAGGCTCCTGGATGATCCAGAGCGAGGAACCATTGTTGATAAA CTTATAGAGGAAGATATCGAAGACTGGAACCACCTGCAGGAACTCCTTTCTATTTGTCAAGCTCAAAGGCACATAGGAGAGACAGCTTTGAACGAGTTCA GCTCCAGATCCCATCAAATCATTCGGATAACAGTGGAAAGTTGTAGTCGCGATAGCTTCGGTGCAGTCAACCTAAGCACTCTTGCAGCTACGCTGAATTT TGTTGATTTGGCAGGGAGCGAGCGTGCTTCTCAGACATGGTCAACTGGTACAAGGTTAAAAGAAGGCTCTCACATTAATCGCAGCTTGCTTACACTGGGG ACTGTAATACGAAAGTTAAGTAAGGGAAAATACGGGCACATACCGTACAGAGAATCCAAGCTGACAAGGATACTTCATAATTGCTTGGGCGGGAATGCTA AGACGGCCATAATTTGTACAATGAGCCCTGCACGTTGTCATGCTGAGCAATCGAGAAACACCCTCATGTTTGCCAGTTGTGCCAAGGAAGTGTCTACCCG TTCACAGGTCAACGTAGTGATGTCGGATAAGGTATTGGTGAAGCAGCTGCAGAAAGAGATTGCAAGGTTGGAGAGCCAAGTAAAGAGCTCTGGATCACTG TCGTTAGCTAACGATACTGCCGCTTTGCTAAAGGAGAAAGACCTTTTGATTGAGCAGATGGAGAAAGAGATTAAAGAATTAACCTGGCAACGTGATCTTG CACAATCTCATATTGACAGTTTGTTGAAATCGGTTGGGGAAGATCGACTCTTTCAAGTGGAAGAGAATTCAGTATCAGAGGCATCAGATGCAGTTCTTGC AAGAACCAACACAGAAAGGGAATATGACCAAATAAGCATGCACAGCCCGCTTACTAAGCTTGAGACACAAGTAAGTTTAGGAGCCAACACACAACAACTG GATGACAGTATTCCTCATCCCTCCCGGCTTAGCACGAGCAATGACTATTGGGAGGATGAAATTCCTCAACGGGACGCTGGTGAGTCTGAAGACATATGTA GGGATGTTACTTGTGTTGGCACGGAATCATCTAGGTTGAACACTAGTTACGACTCGGGCAAAAAGGAAGAGAACCAAGTGATGATAATGGGTACTGGTGA AGGTACATCACATGAAACCAAAGAGCTATGCGACGTTGGTTCCTATGACATGCATGAGATTCTGAGGACGAGACTTCACAAATTGCAGGAGATAATACAG ACTTTAGACGAGTCATGCCCTTGCAGTACGCAAAAAGGCGTATCGTGGACCAGAAGCAAAAGTAAGAAAGTTGTGGTGATGACTATCCCCTGTGAGCTTT GGTCCAACAACAATGGAGAGGAAGAAATAGAAGACGAAGACGGTGAAGAAGATGCTAGACAGTCCGGTGTAACTGAGCAGGCACTTCCTGAGAAAGGGAA AAACCCCAAGGTTGAGGAGGAGGAAGAGGAGACTATTGAAATGGAGTACGAAGCAAAAGTGGAAGAGTTGCGGTTGCAAGATTCAGAATGTCCAGAGATT CACATTGTGTCCAAAGGGATTGATATACAATTTGATGACACAACCAGTGTACTGGACTCTGTAGTAGGAGGGAACGGCAGAATGATTAAACACCATAAGC AACCAACAAGAGAAATTGGTGTCGTTTCGGTTGCAGAACCACTAAGGAGAATCCCAGAAGGGAGGCAGCAACGCACAAGGGACGTTGCTTCAGTGACAAA TCGTAGTTCAACACAAAGCCAAGCTAACTGGTCACAGAAATTTGATAGGTACCGCAGGAAAATCATAGAGCTATGGGCTAAATGCAATGTACCTTTGGTC CACAGAAGTTACTTCTTCCTACTCTTCAAGGGAGATTCGTCGGACAATGTGTACTTAGAGGTTGAACTTAGAAGACTCTACTTCATAAAAGACACAGCTT CTCGTGGAAACAATCCGGTTGTAGATACCCAAATTTCCACTTACACTTCTAGCCCGAAGAATCTAAATCGGGAGAGGATATTCTTGGCCAAGCAATTCCA AAAGAAGTTAACTAGAAGGGAAAGGGAAGAGATTTACCTCAAGTGGAACATAGACATAGACACAAAACAGAGAGCCCTGCAGCTGGCTGGAAAGGTGTGG ACAGACATGAGAAACATGAGGCACATACGGGAAAGTTCTATCCTGGTCGTGAAATTGATCGGATTCGTGGAGCCACAGTATGCTCCAAAGGAACTATTCG GACTCAGCTTCTTAAACCCGTCGGCAAACCAGAAGTCATTTACCTGGAGAGACAACATGTCTGCCCTTCTATGA
AA sequence Show only first row Show all	>Lus10033920 pacid=23172758 polypeptide=Lus10033920 locus=Lus10033920.g ID=Lus10033920.BGIv1.0 annot-version=v1.0 MSMVSSTIRGRGDRRSAVGSSWGGDESVMGDSVAGGSESEKIHVSIRLRPLNDKETSKNDDVSDWECISSTTLIFKSSIPDRSMLPSAFTFDRVFGADSS TKQVYEEVAKEVALSVLSGVNASIFAYGQTSSGKTYTMSGVTEYAIADIFDYIYQNQEREFVLKFSALEIYNEAVRDLLSSDPSPLRLLDDPERGTIVDK LIEEDIEDWNHLQELLSICQAQRHIGETALNEFSSRSHQIIRITVESCSRDSFGAVNLSTLAATLNFVDLAGSERASQTWSTGTRLKEGSHINRSLLTLG TVIRKLSKGKYGHIPYRESKLTRILHNCLGGNAKTAIICTMSPARCHAEQSRNTLMFASCAKEVSTRSQVNVVMSDKVLVKQLQKEIARLESQVKSSGSL SLANDTAALLKEKDLLIEQMEKEIKELTWQRDLAQSHIDSLLKSVGEDRLFQVEENSVSEASDAVLARTNTEREYDQISMHSPLTKLETQVSLGANTQQL DDSIPHPSRLSTSNDYWEDEIPQRDAGESEDICRDVTCVGTESSRLNTSYDSGKKEENQVMIMGTGEGTSHETKELCDVGSYDMHEILRTRLHKLQEIIQ TLDESCPCSTQKGVSWTRSKSKKVVVMTIPCELWSNNNGEEEIEDEDGEEDARQSGVTEQALPEKGKNPKVEEEEEETIEMEYEAKVEELRLQDSECPEI HIVSKGIDIQFDDTTSVLDSVVGGNGRMIKHHKQPTREIGVVSVAEPLRRIPEGRQQRTRDVASVTNRSSTQSQANWSQKFDRYRRKIIELWAKCNVPLV HRSYFFLLFKGDSSDNVYLEVELRRLYFIKDTASRGNNPVVDTQISTYTSSPKNLNRERIFLAKQFQKKLTRREREEIYLKWNIDIDTKQRALQLAGKVW TDMRNMRHIRESSILVVKLIGFVEPQYAPKELFGLSFLNPSANQKSFTWRDNMSALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51150			ATP binding microtubule motor ...		Lus10033920 [exp]	0	1
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	9.4	0.7642
AT3G01435			Expressed protein (.1)		Lus10022634 [exp]	15.6	0.7559
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	15.9	0.7640
AT5G16950			unknown protein		Lus10026852 [exp]	17.9	0.7216
AT2G40390			unknown protein		Lus10017423 [exp]	22.4	0.7289
AT5G63220			unknown protein		Lus10023490 [exp]	24.0	0.7349
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	27.8	0.7381
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	28.0	0.7379
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	29.2	0.7297
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	31.9	0.7024

Compare expression of checked genes

Lus10033920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.