Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42480 761 / 0 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) AT3G19180 91 / 2e-18 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024309 [exp] 1318 / 0 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10042298 [exp] 123 / 1e-28 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10026359 [exp] 116 / 2e-26 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235000 [exp] 893 / 0 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G027501 [exp] 243 / 2e-74 AT5G42480 283 / 1e-89 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Potri.015G028101 [exp] 99 / 3e-21 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G035900 [exp] 94 / 2e-19 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 71 / 2e-13 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033922 pacid=23172796 polypeptide=Lus10033922 locus=Lus10033922.g ID=Lus10033922.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTTAAGCATATCGGCATTAGCACCTGCGCTACGTCTCCAGGACTTATCGACCCTTCCATTTCGCCTCCTTTATCTCGCCGGCAGAATAAGC TCCCTAAGTTCTCGACCGTCACCTTCTCCTCCAGCAAATGGGCCGAACGCCTCCTCGGCGACTTCCAGTTCTTCAGTCCCGCCGCTGACTCTTCTTCCGA ACTTCTTAACTCCCTCTCCACCACAAACACCTCCACCCTCGCTCCTCTTCCTCAGCATCGTCCTCCGCCTCCGCCGCCTCCCGAGCGATTCGTCTTCATT CCTCTTGATTTCTATAAGGTTTTGGGAGCTGAGACTCATTTCCTGGGAGATGGAATCAGGAGAGCGTACCAGGATAGGGTTTCCAAACCTCCTGCCTACG GCTTCAGTCAAGATGCTTTGATCAGCCGTGGGCAGATTCTTCAAGCAGCGTGTGAAACTCTAGCCAATTTCAGTTCCAGAAGAGAATACAATCATGGACT TATTGACGACGAGGAGAATACTATCCTTACTCAAGTTCCCTGGGACAATGTTCCTGGGGCTCTCTGTGTATTGCAAGAAGCAGGGGAGACCGAGGTTGTT CTTGAAATCGGAGAAGCTTTGCTTAAAGAAAGATTGGCCAAGGCCTTCAAGCAAGATGTTGTCTTGGTCATGGCTCTTGCCTATGTTGATATGTCGAGGA ACGCTATGGCATTGGATCCACCTGACTTTATTAGAGGGTGTGATATGCTGGAGAAGGCATTGAAGTTGTTGCAGGAGGAAGGGGCAAGTAGCCTTGCACC GGATTTACAGGCACAAATTGATGAGACACTTGAGGAAATCACCCCTCGTTATGTTCTAGAACTTCTAGCCTTGCCCCTGGACGAAGAATTTCGGATGAAA AGAGAAGAAAGTCTTCAAGGAGTGCGCAATATATTGTGGGCTGTTGGAGGAGGTGGAGCATCACCTCTTTCCGGTGGATTCACGAGGGAAGATTTCATGA AAGAGGCCTTCTTGCGTATGACATCTTCTGAACAGGTTGATCTGTTTGTAGCCACTCCTCCTAACATTCCGCCTCAAAATTTTGAAGTATATGGAGTTGC ACTTGCTTTTATTGCCCAAGCTTTTATGGGTAAAAAGCCTCAACATGTCCCTTACGCTGATAATCTATTTGAGCAACTCCAACAGACCAAAGCAAGTAGT CTGAAAGAAGACTGTGAGACTGAGTATTCCCTGGGAAGAGGTCTATGTTCACTACTTTTGGGCGAGCTTGATGATTGTCATGCATGGTTAGGCTTAGAAC AGGAAAACTCGCCTTACAGAAACCCTGCAGTTGTACAGTTTGTCTTGGAAAATTCAGATGAGGACGATGAAGACAATCTCCGTGGACTTTGTATGGTGCT GGAGACCTGGTTAATGGATGTAGTTTTCCCAAGATTTAGAGATACCAAAGATGTGGAGTTCAGGCTCGGAGACTACTATGATGATCCTGCTGTCTTGAGC TACTTAGAAAGCCGGGAGGGTGCTGGTCGATCACCTCTTGCTGCAGCTGCAGCTATAGTTAGGATAGGGGCCGAGGCATTGCAGAAGGTGTTTCCCTTGA GCCAAGAGGGAAAGATAAATGGGTATCAAGAGAATGGTGTGATCAACTATTCTGTTGCTGTAGTCCCAGAGAGCAATACGATTATTGAAACGCTTAATGT CGGTAAGAAAGACAGCATGGCTGGAGTATCTGTAAAGGGCGTTTTTGATGAAATGCCAGAAACGATAACTGAAAAGATAAAGGACGCTAGTGTTAAAATC ATGAGTGCTGGAGTTGCAATTGGAGTTTTAACTTTAGTTGGATTGAAGTATATGCCATCTAGACATCTCTTCTTGCGCCAAGGAAAGATTGATGAAGCAA CCGTACCTGCCGCTACTTCTGAGGGCGAAAACTCTCTCGATGAACTGTCAAGAATGAATGCAAATGTAGCAGAGGGTATAATCCGCAACTGGCAGAGTAT CAAATATCAGGCATTTGGACCTGATCATTGTCTAGGAAAATTGACTGAGGTCTTGGATGGCCAGATGTTGAAGATCTGGACAGATCGTGCTGTTGAGACT GCAAAGCTTGGCTGGGTATATGACTTCTGCTTACTGGAGTTAACCATCAACGATGTAACAATGTCTTCAGATGGGCAGCAAGCTGTAGTGGAAGCAACTA TAACAGAATCGATCACCTTAACCGATGCTGTCCATCCAAAACAGAACCCGAACACTACAACCTACACAACCAGATATGAGCTTTCAGCCTCGGGTTCAGG ATGGAGAATCACCGAAGGATCATTGTTGATATAG
AA sequence Show only first row Show all	>Lus10033922 pacid=23172796 polypeptide=Lus10033922 locus=Lus10033922.g ID=Lus10033922.BGIv1.0 annot-version=v1.0 MAAFKHIGISTCATSPGLIDPSISPPLSRRQNKLPKFSTVTFSSSKWAERLLGDFQFFSPAADSSSELLNSLSTTNTSTLAPLPQHRPPPPPPPERFVFI PLDFYKVLGAETHFLGDGIRRAYQDRVSKPPAYGFSQDALISRGQILQAACETLANFSSRREYNHGLIDDEENTILTQVPWDNVPGALCVLQEAGETEVV LEIGEALLKERLAKAFKQDVVLVMALAYVDMSRNAMALDPPDFIRGCDMLEKALKLLQEEGASSLAPDLQAQIDETLEEITPRYVLELLALPLDEEFRMK REESLQGVRNILWAVGGGGASPLSGGFTREDFMKEAFLRMTSSEQVDLFVATPPNIPPQNFEVYGVALAFIAQAFMGKKPQHVPYADNLFEQLQQTKASS LKEDCETEYSLGRGLCSLLLGELDDCHAWLGLEQENSPYRNPAVVQFVLENSDEDDEDNLRGLCMVLETWLMDVVFPRFRDTKDVEFRLGDYYDDPAVLS YLESREGAGRSPLAAAAAIVRIGAEALQKVFPLSQEGKINGYQENGVINYSVAVVPESNTIIETLNVGKKDSMAGVSVKGVFDEMPETITEKIKDASVKI MSAGVAIGVLTLVGLKYMPSRHLFLRQGKIDEATVPAATSEGENSLDELSRMNANVAEGIIRNWQSIKYQAFGPDHCLGKLTEVLDGQMLKIWTDRAVET AKLGWVYDFCLLELTINDVTMSSDGQQAVVEATITESITLTDAVHPKQNPNTTTYTTRYELSASGSGWRITEGSLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	0	1
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	2.2	0.8671
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	7.4	0.8388
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	10.7	0.8347
					Lus10018968 [exp]	11.3	0.8192
AT5G41270			unknown protein		Lus10035306 [exp]	13.3	0.8282
AT5G17510			unknown protein		Lus10024530 [exp]	14.3	0.7734
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	14.5	0.8283
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	16.4	0.8294
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	17.0	0.8438
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	17.8	0.8466

Compare expression of checked genes

Lus10033922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.