Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012871 [exp] 49 / 2e-07 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033923 pacid=23172857 polypeptide=Lus10033923 locus=Lus10033923.g ID=Lus10033923.BGIv1.0 annot-version=v1.0 ATGAATGTTGGAAGAGCGAGATCGATCGGCATTGGAGAAGAAACGAGAGCTGGTGGTGTGGTTGGAAGAAGCGGAAGGGTCGATGTTGGGTTTGGAATCA AAGTCGGGAGTGGGAGGAGGGCGGCGGCGGCAGAAGTAGAAGCCGCCTCTCTGTTCATTAGTTGTTGGCTGGGAAGGAGGCGAAGTTGGTCTTTTACATT TGGAAATAAAAGAAGGTTCTTCTTTTTCTTGAGGGTACCTGCACCTGCCTGGTTGAAATCTGTTCTCCCGGAAAACTACGGGACTATCAAAGTCGCAACA GACATCCACGCACTTCGAGTGAGAAGTGAGCGAGGAACTGCAAAAGGGTAA
AA sequence Show only first row Show all	>Lus10033923 pacid=23172857 polypeptide=Lus10033923 locus=Lus10033923.g ID=Lus10033923.BGIv1.0 annot-version=v1.0 MNVGRARSIGIGEETRAGGVVGRSGRVDVGFGIKVGSGRRAAAAEVEAASLFISCWLGRRRSWSFTFGNKRRFFFFLRVPAPAWLKSVLPENYGTIKVAT DIHALRVRSERGTAKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033923 [exp]	0	1
					Lus10027902 [exp]	12.4	0.9094
AT1G06980			unknown protein		Lus10020386 [exp]	12.8	0.8116
					Lus10042085 [exp]	13.3	0.8027
					Lus10017551 [exp]	13.7	0.9046
					Lus10027007 [exp]	15.0	0.7706
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10039462 [exp]	18.1	0.8964
AT5G63135			unknown protein		Lus10019491 [exp]	22.4	0.8334
					Lus10015895 [exp]	25.1	0.8961
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	28.6	0.7845
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	29.7	0.8916

Compare expression of checked genes

Lus10033923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.