Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36180 1165 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G75640 1153 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 401 / 3e-121 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 398 / 4e-119 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 394 / 1e-117 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 382 / 7e-114 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 372 / 1e-110 Leucine-rich repeat protein kinase family protein (.1) AT5G56040 365 / 3e-108 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G56370 347 / 1e-102 Leucine-rich repeat protein kinase family protein (.1) AT4G08850 345 / 2e-101 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033926 [exp] 1625 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 1557 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 1043 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 400 / 7e-120 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 381 / 9e-113 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039030 [exp] 376 / 9e-112 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10038392 [exp] 375 / 9e-111 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023323 [exp] 366 / 4e-108 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036251 [exp] 367 / 9e-108 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1342 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 1285 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 1122 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 402 / 2e-121 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 399 / 1e-120 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 392 / 7e-118 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 391 / 3e-116 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G065400 [exp] 388 / 3e-116 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 388 / 2e-115 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 379 / 4e-113 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033924 pacid=23172862 polypeptide=Lus10033924 locus=Lus10033924.g ID=Lus10033924.BGIv1.0 annot-version=v1.0 ATGGCAACGGCTATTTCGCTCATCCCCATTCTCACAGCCTTCTTCTCCCTTCTCATCCTTACCGCCGTTGCCACGTCCGAGATCCAAGCTTTGACCGCCT TCAAACTCGCCCTCCACGACCCTTTCGGCGCTTTAGACCGCTGGGACCCTTCCACACCCTTCGCCCCTTGCGACTGGCGTGGTATTTCCTGCTTCCATGG TCAAGTCCGCGAGCTCCTCTTGCCTCAGCTCCAACTCGCCGGCCCACTCACTCCCCAGATCGGCGAGTTGCGCCACCTGCGGAAGCTCAACCTTCACTCC AACAGCTTCAACGGCTCCATACCCCGCTCCCTCTCTCACTGCTCTCTCCTTCGAGCCGTCTATCTGCAGTATAATTCCCTCTCTGGTGACCTCTCGCCTT CCATAATCAACCTCACTAGTATCCAAGTGTTCAACGTTGCCAGTAATTTTCTCTCCGGTAGAATCCCTAGCGGCTTCTCCACTTCCCTCCGTTTCCTCGA CTTATCGTCCAACTCCTTCTCAGGGGAGTTACCGTCGAACTTCTCTGCGGATTCGCAGCTCCAGCTTCTAAATTTGTCGTTCAACAGCTTCTCCGGCGAG GTTCCGACGAGTATTGGCCAGCTCCAGGGTCTTCAGTACTTGTGGCTTGATTCGAATAGGTTGTACGGTACACTACCATCGGCTATTTCCAACTGTTCGT CTCTTATACAGCTGAGCGTGGAGGATAACGCGCTGAGAGGACTGATTCCAGCAACCATCGGCTCCATTCCCAATCTCCAGGTGCTTTCTCTCTCTCGGAA CGAGCTATCCGGCTCTATTCCGTCAAGTCTTTTATGCAATGTCCAAGGAAATTTTTCGGCCGGACTTCGGGTTGTGAATTTAGGATTTAATGCACTCACA GGAATAGCTCAGCCGCCGGACAGCGGCGGTGGAGGAGGAGGAAAATGTGCGAGTTCCTTGGAAGTTATAGACGTTCACGAGAATCGCATTAACGGCGTGT TCCCTGTGTGGTTGACTAACATCACCACTCTCCAAGTCATTGACCTCTCTAGAAACTTCTTCGCCGGGTTTTTGCCGGCTGGGATTGGAAATCTTTTCCG GTTACGAGAGCTAAGAGTCCCTGGTAATTCGCTCAATGGCAGTCTCCCTACTGACATGGCAAAATGTACTTCTCTACAAGTGCTTGACATCGGAGACAAT CGCTTCTCCGGCGAGATTCCTTCCTTCCTCACCGACTTACTCGCTCTCAGAACACTTTCCCTTGGAGGGAATCTGTTTTCCGGGTCCGTCCCTTCCGGTT TCCGCAACTTGATTGAGCTGGAAGCGTTTAACTTAGGCGACAATGATCTGGAAGGAAGTTTTCCGGAGGAGATACTGAGAATGGCGAATCTGAGCACATT GAATCTCAGCCACAATCAATTTGGTGGCCAAGTTCCTTCGAGTATAGGAGACCTAAAAGGATTACAGGTGTTGAACTTAAGCGGTTGCGGCTTTTCAGGG AAGATTCCGGTGGGCATTGGTGGATTGGTGAAGCTGTCAACTCTAGATTTGAGCAAACAGAACTTGTCCGGCGAGTTACCTGTAGAGCTGTTTGGGTTAC CAAGTTTGGAAGTCATTCACTTGGAAGAGAACAAATTATCAATGGATATTCCAGAGGGCTTTAGCAGCTTAGTCACTCTGCAATATCTCAATCTTACTTC CAATTTATTCAGCGGCGAGATCCCGGGGACTTATGGGTTTCTGAGGTCGTTGACTGTTGTTTCATTGTCAAAGAATAGCATTTCAGGGCAGATTCCAGGA GAGCTTGGCAATTGTACAAGTCTTCAGATCCTCGAGCTTCGTTCAAATCGTTTAACTGGCGAAATTCAAGGTGACATCTCCCGTTTATCTCACTTGAGCC GGCTAGATTTGGGGCAGAATAGTTTGACAGGAGAAATTCCAGGGGAGATTGACAAATGCTCTTCTCTATCATCTCTTCTTTTGGATGACAATAGACTATC AGGGCGTATTCCAAAGTCATTGTCCAATCTATCCAATTTAACAGCTCTGAACCTCTCGTCCAACAGTTTGAGTGGCCACATCCCAGCTGATATTTCATCA ATTTCTGGGTTGAATTACTTGAATTTATCAGGGAACAGCTTAGAAGGCGAGGTCCCTGAGCCACTAGGCGTTCGTTTCAATGATCCTTCAGTGTTCTCCA TGAACAAAAAGTTGTGTGGAAAACCATTGGAAAAGGAATGCTCAAATGTGAAGAACAGGAAAAGGAGGAAACTAATTCTGTTCTTAGTCGCTGTCATAGT TGGATGCTTACTTTTAACATTAGGTTGCTCTGGATACATTTACAGCCTCCTCAGATGGAGAACCAAGCTTCGGGATTTTGCTGCAGGGAAGAAGCCAAGC CCCAAACGTTCTAGCTCAGGAACGGACAAAAGCAGAGGAAGTAATGGTGGAGAGAACAACGGAGGAGGGCCAAAGGTAATAATGTTCAACAACAAGATAA CCTATGCGGAAACCATTGAGGCGACGAGGAATTTCGACGAAGAACATGTTCTAAGCAGGGGAAGATACGGTCTCTTGTTCAAATCATTGTACCAAGACGG AATGGTACTGGCTATCCGTCGCCTCCTTGACGGTTCTACGGTTGAAGAGGCCACATTCCGCAAGGAAGCCGAATCCCTAGGCAGAGTGAAGCACCGGAAC TTAACGGTCCTACGAGGCTATTACGCGGGCCCGCCACCTGATGTAAAACTTCTGGTTTACGATTACATGCCAAATGGTAACTTAGCCACATTGCTCCAGG AAGCTTCACACCAAGATGGGCATGTTCTGAACTGGCCAATGCGTCATTTGATTGCCTTGGGCATAGCTCGTGGCCTAGCTTTCCTTCACTCTAAATCGAT GGTCCACGGTGATCTGAAGCCGACGAATGTCCTGTTCGATGCAGATTTCGAAGCACATTTGTCTGAATTTGGGCTGGATAAGCTTACGTTACAATCACAA CAAGCTAAAGCATCCTCATCGGCAGATGGAGTGGGGTCGGTAGGCTACGTGGACCCCGAGGCGGTCCTGACCGGGGAGGCGGCGAAGGAAGGTGACGTGT ACAGCTTCGGGATTGTGCTACTTGAGATACTAACGGGGAAGAAACCAGCAATGTTCAAGGAGGAGGAGGATGAAAACATCGTGAAATGGGTGAAGAAGCA GCTGCAGACTGGACGGGTGTCGGAGCTGCTGGAACCTGGGTTGCTGGAGCTTGACCCTGAATTATCGGAGTGGGAGGAGTTCCTGTTGGGTCTCAAAGTT GGACTCCTGTGTACAGCTTGTGATCCGGCAGATCGGCCGTCGATGAGTGACGTGGTGTTCATGCTAGAAGGGTGCAGGGTTGGTCCGGAGATGCCTTCCT CAGCTGATCCCACCTCAATCCCATCGCCAGTAAACATTTGA
AA sequence Show only first row Show all	>Lus10033924 pacid=23172862 polypeptide=Lus10033924 locus=Lus10033924.g ID=Lus10033924.BGIv1.0 annot-version=v1.0 MATAISLIPILTAFFSLLILTAVATSEIQALTAFKLALHDPFGALDRWDPSTPFAPCDWRGISCFHGQVRELLLPQLQLAGPLTPQIGELRHLRKLNLHS NSFNGSIPRSLSHCSLLRAVYLQYNSLSGDLSPSIINLTSIQVFNVASNFLSGRIPSGFSTSLRFLDLSSNSFSGELPSNFSADSQLQLLNLSFNSFSGE VPTSIGQLQGLQYLWLDSNRLYGTLPSAISNCSSLIQLSVEDNALRGLIPATIGSIPNLQVLSLSRNELSGSIPSSLLCNVQGNFSAGLRVVNLGFNALT GIAQPPDSGGGGGGKCASSLEVIDVHENRINGVFPVWLTNITTLQVIDLSRNFFAGFLPAGIGNLFRLRELRVPGNSLNGSLPTDMAKCTSLQVLDIGDN RFSGEIPSFLTDLLALRTLSLGGNLFSGSVPSGFRNLIELEAFNLGDNDLEGSFPEEILRMANLSTLNLSHNQFGGQVPSSIGDLKGLQVLNLSGCGFSG KIPVGIGGLVKLSTLDLSKQNLSGELPVELFGLPSLEVIHLEENKLSMDIPEGFSSLVTLQYLNLTSNLFSGEIPGTYGFLRSLTVVSLSKNSISGQIPG ELGNCTSLQILELRSNRLTGEIQGDISRLSHLSRLDLGQNSLTGEIPGEIDKCSSLSSLLLDDNRLSGRIPKSLSNLSNLTALNLSSNSLSGHIPADISS ISGLNYLNLSGNSLEGEVPEPLGVRFNDPSVFSMNKKLCGKPLEKECSNVKNRKRRKLILFLVAVIVGCLLLTLGCSGYIYSLLRWRTKLRDFAAGKKPS PKRSSSGTDKSRGSNGGENNGGGPKVIMFNNKITYAETIEATRNFDEEHVLSRGRYGLLFKSLYQDGMVLAIRRLLDGSTVEEATFRKEAESLGRVKHRN LTVLRGYYAGPPPDVKLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSKSMVHGDLKPTNVLFDADFEAHLSEFGLDKLTLQSQ QAKASSSADGVGSVGYVDPEAVLTGEAAKEGDVYSFGIVLLEILTGKKPAMFKEEEDENIVKWVKKQLQTGRVSELLEPGLLELDPELSEWEEFLLGLKV GLLCTACDPADRPSMSDVVFMLEGCRVGPEMPSSADPTSIPSPVNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	0	1
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	2.8	0.9305
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	4.2	0.9288
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	4.7	0.9448
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	6.7	0.9171
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	6.7	0.9422
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	7.5	0.9439
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Lus10036319 [exp]	9.5	0.9353
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	10.2	0.9325
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	10.6	0.9170
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	11.5	0.9151

Compare expression of checked genes

Lus10033924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.