Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75640 1198 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 1184 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 443 / 5e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 425 / 1e-129 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 424 / 4e-129 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 415 / 1e-126 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 414 / 3e-125 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 410 / 1e-124 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 403 / 5e-121 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 393 / 3e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042177 [exp] 1756 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033924 [exp] 1689 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 1140 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 407 / 2e-123 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039030 [exp] 402 / 1e-121 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10038392 [exp] 400 / 3e-120 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10018911 [exp] 395 / 4e-119 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023323 [exp] 395 / 8e-119 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 389 / 3e-117 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1390 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 1387 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 1190 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 421 / 8e-129 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 410 / 1e-124 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 412 / 2e-124 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 404 / 3e-122 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.004G065400 [exp] 404 / 3e-122 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 400 / 4e-121 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 397 / 6e-120 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033926 pacid=23172821 polypeptide=Lus10033926 locus=Lus10033926.g ID=Lus10033926.BGIv1.0 annot-version=v1.0 ATGACGACGGCTATCTCCTTCATCTCCATTCTCTCCCTCTTTCTCACCACCATTATCGCCAACGCTGCCGTCGTCTCCGAGATCCAAGCATTGACCGCTT TCAAACTCCCTCTCCACGACCCTCTCGGCGCCTTAGATGCCTGGGATTCCTCCACACCCGCCGCTCCCTGCGACTGGCGCGGCATTACTTGTTTCAACGG CCGAGTTCGCGAGCTCCGCTTGCCTCAGCTCCAACTCGCTGGCCCACTCACTTCACTCCTTGGTGAGTTACGCCAGCTCAGGAAGCTCAGCCTTCACTCC AACAACTTCAATGGCTCCATACCTAATTCCCTCTCTCACTGCTCTCTCCTTCGAGCTGTCTACCTTCAGTACAATTCTCTCTCCGGCGACCTTCCGCTTT CCCTGCTTAATCTTACCAATCTCCAGGTGTTTACCGTCGCTTCCAATTTCCTCTCCGGCAGAATCCCTACTGGATTCTCGGTTTCCCTCCGATTCATCGA CTTGTCCTCCAACTACTTCTCCGGAGACCTACCCTCTAACTTCTCTTCGGATTCCCAGCTTCAGCTTGTTAATCTCTCGTTCAACAACTTCTCCGGTGAG GTTCCGCCGAGTATTGGTCAGCTCCAGGGGCTTCAGTACTTGTGGCTTGATTCCAACAGCCTCTACGGTACTCTGCCCTCGGCGATTGCCAACTGTTCGT CTCTTGTTCATCTGAGCGTGGAGGATAACGCTCTGAGAGGACTGATTCCAGCGACCATCGGCTTGATTCCGAATCTCCAGGTGCTTTCCCTTTCTCGGAA TGAGCTCTCCGGCTCTATTCCGTCGAGTATTTTCTGCAATGCCCGGGGCAATTTTTCGGCTGGGCTTCGGATTCTGGAGTTAGGGTTTAATTCGCTCACG GGAATAGCTGAGCCGCCAAACGACGGAGGAGGAGGAAGATGTGTGAGTTCCTTACGAGTTATAGACGTTCACGAGAACCGCATTAACGCCGTTTTCCCTA CGTGGTTGACTAACATCACCACACTTCAAGTCATTCAACTTTCTAGAAACTTCTTCGCCGGGTTTTTCCCGGCAGGGATCGGAAACCTTTCCCGGTTACG AGAGCTAAGAGCGGCCAGCAATTTGTTCAACGGCAGTCTCCCAACTGACATCGCAAAATGTACTTCTCTACAAGTCCTTGACGTTGGACAGAATCGATTC TCCGGCGAGATTCCTTCCTTCCTCACCGGCTTACTCGCTCTCAGAACACTTTCCCTTGGAGGGAATCTGTTTTCCGGTCCCGTCCCTACCGGCTTCCGCA ACTTGGTTGAGCTGGAAACGTTGAACTTGAGCGACAATGATCTGAAAGGAAATTCCCCGGAGGAGATACTAAGAATGACGAATTTAAGCACATTGAATCT CAGCCATAACCGGTTTGGTGGTCAAGTTCCTTCCAATATAGGAGACTTGAAAGGATTACAGGTATTGAACTTGAGCGCCTGCGGGTTTTCAGGTAAGATT CCGATAGCCATTGGCGGATTGTTGAAGCTAGCAACTCTAGATTTGAGCAAACAAAACTTGTCCGGCGAATTGCCGGTAGAGCTGTTTGGATTACCAAGTT TGGAAGTCGTTCACCTGGAAGAGAACAAATTATCTCAAGATATTCCGGAGGGGTTTAGCAGTTTAGTGAGTCTGCAATATCTCAATCTCACTTCCAATTC ATTCATCGGTGACATCCCAGGGACTTATGGGTTTCTGAGGTCGTTGGCTGTTCTCTCATTGTCAAAGAATGGCATTTCGGGGCAGATTCCAGAGGAGCTT GGCAACTGTACAAGTCTCCAGATCCTCGAGCTCCGTTCAAATCGTTTAACTGGCGAAATCCCAGGTGACATCTCACATTTATCTCATCTGAACCAGCTCG ATTTGGGGCAGAATAGTTTGAGAGGAGAAATTCCAGGGGAGATTTACAAATGCTCTTCTCTATCATCTCTTCTTTTGGATGACAATGAACTATCAGGCAG TATTCCAAAGTCATTATCCAAGCTGTCCAATTTAACAGCTCTGAACCTTTCGTCCAACAGTTTGAGTGGGCACATCCCAGCCAACATTTCATCAATCACT GGGCTGAATTACTTGAATGTATCAGGGAACAGTTTAGAAGGTGAGATCCCTGAGGCACTAGGCGTTCGCTTCAATGACCCTTCAGTGTTCTCCATGAACA AAAGGTTATGTGGGAAACCATTGCACAAGGGATGCTCAAATGTGAAGAAGAGGAAACTAATTCTGTTCATAGCTGTTATCACTGGTGGAAGTTTATTTCT AGCATTGTGTTGCTCCGGATACATTTACAGCCTTCTCCGGTGGCGAACCAAGCTCCGGGAATTTGCGGCCGAGAAGAAACCAAGTCCAAATCGAGTAAGT TCAGGAACAGACAGAGGCAGAGGAAGTAATGGTGGAGAGAACAATGGAGGGCCAAAGCTAGTAATGTTCAACAACAAGATAACCTATGCAGAAACCATCG AGGCGACGAGGAATTTCGACGAGGAAAACGTTCTAAGCAGGGGAAGATACGGTCTGGTGTTTAAATCATCGTACCAAGACGGAATGGTGCTGGCTATCCG CCGCCTCCTGGATGGATCTACGGTTGAGGAGGCCACATTCCGCAAGGAAGCAGAATCCTTAGGCAGAGTAAAGCACCGTAACTTAACGGTCCTGCGAGGC TATTACGCGGGCCCGCCACCGGATGTGAAACTTCTGGTTTACGATTACATGCCCAATGGAAACTTAGCCACATTGCTTCAGGAAGCTTCACACCAGGATG GCCATGTCCTGAACTGGCCAATGCGCCACTTGATTGCTTTAGGCATAGCTCGTGGCCTAGCTTTCCTGCACTCTATAACTATGGTCCACGGGGATCTAAA GCCGATGAACGTACTATTCGATGCTGATTTCGAAGCACATTTGTCTGAATTCGGACTGGAAAAGCTTACCATTCCAGCACCAGCGGAAGCTTCATCGTCA GCGGCTCCAGTTGGGTCAGTAGGGTACGTGGCACCGGAGGCTGTGCTGACTGGTGAAGCAACAAAGGAAGCAGACGTTTACAGCTTTGGGATAGTGTTGC TAGAGATACTGACAGGGAAGAAACCGGCGATGTTCAGTCAAGTGGGGGATGAAGACATAGTGAAGTGGGTGAAGAAGCAGTTACAGACGGGTCAAGTATC GGAGCTGTTGGAGCCCGGGTTGCTGGAACTTGACCCGGAATTGTCAGAGTGGGAGGAGTTTTTGTTGGGGGTGAAAGTTGGACTTTTGTGTACGGCTGGT GATCCGGTGGATCGGCCGTCGATGAGTGACGTGGTGTTCATGCTAGAAGGGTGCAGGGTTGGTCCGGAGATGCCTTCCTCGGCTGATCCCACCTCGCCAG TAGTCGTGTGA
AA sequence Show only first row Show all	>Lus10033926 pacid=23172821 polypeptide=Lus10033926 locus=Lus10033926.g ID=Lus10033926.BGIv1.0 annot-version=v1.0 MTTAISFISILSLFLTTIIANAAVVSEIQALTAFKLPLHDPLGALDAWDSSTPAAPCDWRGITCFNGRVRELRLPQLQLAGPLTSLLGELRQLRKLSLHS NNFNGSIPNSLSHCSLLRAVYLQYNSLSGDLPLSLLNLTNLQVFTVASNFLSGRIPTGFSVSLRFIDLSSNYFSGDLPSNFSSDSQLQLVNLSFNNFSGE VPPSIGQLQGLQYLWLDSNSLYGTLPSAIANCSSLVHLSVEDNALRGLIPATIGLIPNLQVLSLSRNELSGSIPSSIFCNARGNFSAGLRILELGFNSLT GIAEPPNDGGGGRCVSSLRVIDVHENRINAVFPTWLTNITTLQVIQLSRNFFAGFFPAGIGNLSRLRELRAASNLFNGSLPTDIAKCTSLQVLDVGQNRF SGEIPSFLTGLLALRTLSLGGNLFSGPVPTGFRNLVELETLNLSDNDLKGNSPEEILRMTNLSTLNLSHNRFGGQVPSNIGDLKGLQVLNLSACGFSGKI PIAIGGLLKLATLDLSKQNLSGELPVELFGLPSLEVVHLEENKLSQDIPEGFSSLVSLQYLNLTSNSFIGDIPGTYGFLRSLAVLSLSKNGISGQIPEEL GNCTSLQILELRSNRLTGEIPGDISHLSHLNQLDLGQNSLRGEIPGEIYKCSSLSSLLLDDNELSGSIPKSLSKLSNLTALNLSSNSLSGHIPANISSIT GLNYLNVSGNSLEGEIPEALGVRFNDPSVFSMNKRLCGKPLHKGCSNVKKRKLILFIAVITGGSLFLALCCSGYIYSLLRWRTKLREFAAEKKPSPNRVS SGTDRGRGSNGGENNGGPKLVMFNNKITYAETIEATRNFDEENVLSRGRYGLVFKSSYQDGMVLAIRRLLDGSTVEEATFRKEAESLGRVKHRNLTVLRG YYAGPPPDVKLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSITMVHGDLKPMNVLFDADFEAHLSEFGLEKLTIPAPAEASSS AAPVGSVGYVAPEAVLTGEATKEADVYSFGIVLLEILTGKKPAMFSQVGDEDIVKWVKKQLQTGQVSELLEPGLLELDPELSEWEEFLLGVKVGLLCTAG DPVDRPSMSDVVFMLEGCRVGPEMPSSADPTSPVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	0	1
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	1.0	0.8794
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	4.7	0.8478
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	8.1	0.8072
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	9.2	0.7826
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10034646 [exp]	11.0	0.6908
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	11.8	0.8004
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	12.0	0.8075
AT1G16520			unknown protein		Lus10031193 [exp]	14.1	0.7986
AT5G47400			unknown protein		Lus10007801 [exp]	14.9	0.8136
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	15.6	0.7894

Compare expression of checked genes

Lus10033926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.