Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24160 190 / 1e-59 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024310 [exp] 214 / 3e-68 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235200 [exp] 179 / 1e-54 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 169 / 7e-51 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033927 pacid=23172732 polypeptide=Lus10033927 locus=Lus10033927.g ID=Lus10033927.BGIv1.0 annot-version=v1.0 ATGGCAGAAGAGCTTAATTCCTCTTCTTCTCTGGAAGCCGCACAGACTCTGTCTCCAGCGGCATCGTCGTGGGCGAAGACCAGATCTTTGTGGCCTTCTG TTCTCCGCTGGATCCCAACTTCCACCGATCACATCATCGCCGCCGAAAAACGCCTCCTTTCCATCGTCAAGACGCCATACGTTCAAGAGAGAGTTAATAT AGGTTCAGGGCCGCCGGGTTCCAAGCATCCTGAGCATGTTCAGCACTTGGTTTTGGTTGTATCAGCTGGATTTTCATCAGAAGCTAATGCCAAGTCCGAG TGGCTTACCCGGTACAGGACAACATTGAAAGGTGCACTCCTGAATCACTTATGGGAGTCTAACTTCATCCCTCAAAAAATGGTTAGAGGTTTACGTCCTT GGGATCCAAATATTGTTCAACGATATACATCTGCTCGATTTGGTGCATATGCAAGAGGAGAGATGTTGACTGAGACCGAGTCCAAGTTGCTAACAGGCAA GGCTAGTGGAGAGTTGTGCCTCAAGTACATATTTTCCTTTGGAGCTTTCGCTCGTAAGCCCCTGTTACAAAGGTGTGATGATCTTGCTTGTTTCATTTTT TCGCCCTTCGCATTTGCTTATTTCGTGAACTAG
AA sequence Show only first row Show all	>Lus10033927 pacid=23172732 polypeptide=Lus10033927 locus=Lus10033927.g ID=Lus10033927.BGIv1.0 annot-version=v1.0 MAEELNSSSSLEAAQTLSPAASSWAKTRSLWPSVLRWIPTSTDHIIAAEKRLLSIVKTPYVQERVNIGSGPPGSKHPEHVQHLVLVVSAGFSSEANAKSE WLTRYRTTLKGALLNHLWESNFIPQKMVRGLRPWDPNIVQRYTSARFGAYARGEMLTETESKLLTGKASGELCLKYIFSFGAFARKPLLQRCDDLACFIF SPFAFAYFVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10033927 [exp]	0	1
AT3G15160			unknown protein		Lus10019614 [exp]	10.5	0.8178
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	11.7	0.7652
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	15.0	0.7895
AT3G27870			ATPase E1-E2 type family prote...		Lus10008776 [exp]	19.4	0.7472
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	32.5	0.7844
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	37.1	0.7991
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	37.5	0.8043
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	38.3	0.8157
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	48.3	0.8062
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	48.6	0.8005

Compare expression of checked genes

Lus10033927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.