Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 81 / 2e-17 disease resistance family protein / LRR family protein (.1) AT2G33030 68 / 9e-14 AtRLP25 receptor like protein 25 (.1) AT5G40170 69 / 1e-13 AtRLP54 receptor like protein 54 (.1) AT4G13920 68 / 4e-13 AtRLP50 receptor like protein 50 (.1) AT2G25470 67 / 7e-13 AtRLP21 receptor like protein 21 (.1) AT1G74190 66 / 1e-12 AtRLP15 receptor like protein 15 (.1) AT1G74200 66 / 1e-12 AtRLP16 receptor like protein 16 (.1) AT1G71400 66 / 2e-12 AtRLP12 receptor like protein 12 (.1) AT1G74180 66 / 2e-12 AtRLP14 receptor like protein 14 (.1) AT1G58190 66 / 2e-12 AtRLP9 receptor like protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039512 [exp] 184 / 1e-53 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10016325 [exp] 145 / 9e-42 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 145 / 1e-39 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10002754 [exp] 109 / 9e-28 AT1G08590 139 / 2e-35 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039522 [exp] 106 / 5e-27 AT2G34930 165 / 1e-44 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 100 / 5e-24 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10000236 [exp] 100 / 5e-24 AT2G34930 328 / 2e-101 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 98 / 2e-23 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 95 / 2e-22 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 109 / 1e-27 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 102 / 9e-25 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 97 / 4e-23 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 97 / 4e-23 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 96 / 1e-22 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 93 / 9e-22 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 93 / 1e-21 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 89 / 2e-20 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 88 / 6e-20 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 88 / 6e-20 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10033931 pacid=23154695 polypeptide=Lus10033931 locus=Lus10033931.g ID=Lus10033931.BGIv1.0 annot-version=v1.0 ATGCTCGATTTCAGCGGAAACAAGCTTGTTGGTACAATTCCTGCCTGGATTGGGGAAAAGCTAAGAAACCTGATGATTCTCAACCTGAGGGGAAATAATT TCCAGGGAAGAATCCCTAAGGAACTATGCAGGGTGAATACCCTCCACGTTTTAGACCTCGCTGACAACAATCTCACTGGAATTATCCCCAGATGCGTCAA CAACTTCACAGCAATGGTTCGGATGAATGATTCAGGCGGAATCATTCTCGTGAGCGACCCTATTGTGAGGGGAGCCTTATTCGAAAGAGAACTAATTGTG ATCAAAGGAAAGCTGAATGAGTATGGGTCAATCCTGAAACTGATTCAGCGGCAGAATTCCTTCAAACACACAGATCCAGGGATTTCCTTCCTCAACTTTA CCGGGAACTTGAATCTATGCGGGCTACCACTTGCGAAGAACTGTAGCTGGGACAATATTGTTGCACCTGGAGGCGATGTAGATGCTAATTCAAGAACCAG CAAGGAGGAGGAAAGCCAGGAATTCGCGCAGTTGGGGTTTTATGTGAGCATGGGAACAGGGTTCATCGTGAGATTCTGGGGTGTGGTAGGTTCTTTAGGG CTAAGCAGGAAATGGAGGTGTGAATTCTTTCGGTTTATTGACTCGGCTCGATTTTAA
AA sequence Show only first row Show all	>Lus10033931 pacid=23154695 polypeptide=Lus10033931 locus=Lus10033931.g ID=Lus10033931.BGIv1.0 annot-version=v1.0 MLDFSGNKLVGTIPAWIGEKLRNLMILNLRGNNFQGRIPKELCRVNTLHVLDLADNNLTGIIPRCVNNFTAMVRMNDSGGIILVSDPIVRGALFERELIV IKGKLNEYGSILKLIQRQNSFKHTDPGISFLNFTGNLNLCGLPLAKNCSWDNIVAPGGDVDANSRTSKEEESQEFAQLGFYVSMGTGFIVRFWGVVGSLG LSRKWRCEFFRFIDSARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	0	1
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	1.4	0.8364
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	4.9	0.8107
					Lus10007510 [exp]	8.0	0.7752
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	10.3	0.7191
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	10.5	0.7666
					Lus10014474 [exp]	11.2	0.8031
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	12.2	0.7577
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	13.0	0.7969
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	13.0	0.7812
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	13.1	0.8236

Compare expression of checked genes

Lus10033931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.