Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05360 51 / 2e-07 AtRLP30 receptor like protein 30 (.1) AT3G20820 49 / 4e-07 Leucine-rich repeat (LRR) family protein (.1) AT2G34930 49 / 6e-07 disease resistance family protein / LRR family protein (.1) AT3G28890 47 / 5e-06 AtRLP43 receptor like protein 43 (.1.2) AT5G12940 46 / 7e-06 Leucine-rich repeat (LRR) family protein (.1) AT5G27060 44 / 3e-05 AtRLP53 receptor like protein 53 (.1) AT3G12610 43 / 8e-05 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT1G71400 43 / 0.0001 AtRLP12 receptor like protein 12 (.1) AT1G54470 42 / 0.0002 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74180 42 / 0.0002 AtRLP14 receptor like protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039512 [exp] 174 / 2e-50 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10039529 [exp] 98 / 1e-23 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016324 [exp] 77 / 3e-16 AT4G20140 268 / 9e-78 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039531 [exp] 76 / 6e-16 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 72 / 1e-14 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 70 / 9e-14 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 67 / 7e-13 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 66 / 3e-12 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016338 [exp] 64 / 1e-11 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196832 [exp] 69 / 2e-13 AT2G34930 203 / 8e-57 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 68 / 3e-13 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.001G027500 [exp] 66 / 1e-12 AT2G34930 130 / 1e-33 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 66 / 1e-12 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 66 / 1e-12 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 66 / 2e-12 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 63 / 2e-11 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 63 / 2e-11 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 61 / 7e-11 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 61 / 1e-10 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033932 pacid=23154757 polypeptide=Lus10033932 locus=Lus10033932.g ID=Lus10033932.BGIv1.0 annot-version=v1.0 ATGTCTCGCATCACCCTGTTCTTCAGACCACCTGCAGCGTTAATAATCCTGATGATCATCATCCTTCCATCCAGCAATGGCTCACTGTCAACTCTCACAC CAGACTGCCGACCTACAGAGAGGAAAGCTCTTCTTCAGTTCAAGCAACATCATCTCGTTGACTTCTCGGGTCACCTCGACTCTTGGTCAGCTGACAGCGG AGACTGCTGCAGAACATGGTCAGGAGTTGTCTGTGACAACGTCACTGGATATGTACTTGACCTTCATCTTGGTTATGAACTTGATAACCTGTCAAAACTC GCGATCCCGGATCTCATAGTTATTGACGTTCAAGTCCTGAGTCTAGATTGGGTTTCTAGTCTCACTTCCTTGGAAATCTTACGCCTCGATTTCCTGGACC TCAGTAAACTTTCGAATTCTTGGCTAGATGCCACAAGTAAGCTCCCTTCGCTTGTCGAATTGCGCCTCCCAAATTGCGGAATTATTCAGGTTCCGCCGCT CCTGAACCCTGTCATTTTCTCGTCTTCAATATCTGTTCTTGATTTGTCTTGCAACAATTCTCTGGTCAACCTTCATTCTCCAACTGGATTCTTCATCTCA AGTCCTTAA
AA sequence Show only first row Show all	>Lus10033932 pacid=23154757 polypeptide=Lus10033932 locus=Lus10033932.g ID=Lus10033932.BGIv1.0 annot-version=v1.0 MSRITLFFRPPAALIILMIIILPSSNGSLSTLTPDCRPTERKALLQFKQHHLVDFSGHLDSWSADSGDCCRTWSGVVCDNVTGYVLDLHLGYELDNLSKL AIPDLIVIDVQVLSLDWVSSLTSLEILRLDFLDLSKLSNSWLDATSKLPSLVELRLPNCGIIQVPPLLNPVIFSSSISVLDLSCNNSLVNLHSPTGFFIS SP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10033932 [exp]	0	1
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	3.2	0.9088
					Lus10010253 [exp]	8.9	0.8731
AT5G10530			Concanavalin A-like lectin pro...		Lus10020452 [exp]	9.2	0.8229
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	10.0	0.9005
					Lus10027774 [exp]	10.8	0.8708
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	15.1	0.8879
					Lus10032670 [exp]	20.5	0.8844
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	20.8	0.8659
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	21.4	0.8854
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	24.1	0.8790

Compare expression of checked genes

Lus10033932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.