Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11160 850 / 0 Translation initiation factor 2, small GTP-binding protein (.1) AT1G17220 332 / 3e-100 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT1G21160 78 / 1e-14 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 72 / 8e-13 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 70 / 5e-12 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 70 / 6e-12 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 62 / 1e-09 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT5G39900 57 / 4e-08 Small GTP-binding protein (.1) AT5G13650 57 / 4e-08 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005581 [exp] 309 / 2e-92 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10013713 [exp] 309 / 5e-92 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10012856 [exp] 84 / 3e-16 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 82 / 1e-15 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 56 / 2e-09 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10007535 [exp] 50 / 5e-06 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10015364 [exp] 50 / 7e-06 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10012200 [exp] 49 / 1e-05 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007250 [exp] 48 / 3e-05 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095500 [exp] 948 / 0 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.011G140100 [exp] 337 / 2e-102 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G436300 [exp] 326 / 2e-98 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.019G103600 [exp] 77 / 2e-14 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.012G039200 [exp] 77 / 4e-14 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.006G053000 [exp] 58 / 2e-08 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.017G079800 [exp] 50 / 4e-06 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 44 / 0.0005 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [flax] [poplar] PF11987 [flax] [poplar] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Lus10033933 pacid=23154879 polypeptide=Lus10033933 locus=Lus10033933.g ID=Lus10033933.BGIv1.0 annot-version=v1.0 ATGGCTTGGAGAGCAGTTGGGGAAAAGGGTATTAAAAATTCTCTGAACAAAGCCTTTACTTTGTCATCATGCGGACATGTAGTAGGGGCAACCTCGAAAG TCAATCGTGACTTCACAGTGAGATCAATTTCAGCTTTCTCCAGTGATAGAAAAGGCTTTACTTGGTGCTCATGTTCATCGGGGACATCTCATGATGATGT TCTGGCTAAAGAATTCTTCATCAGGCACTTTCATGGCACTCCGAGCCTATTCAGTAGAAAAGAAATTGACAAGGCCTTGGGGTTTAAAACAGAAAGGAAG GGAAAGTTTAAGAGAAAGGACAAATCACAGATGAAACCACCAGTTGAAGCCAAATATGTGCTGCCTAAACTAAAACAGTCGATGAAGCAAGATAAAACTG TTGACATATTTGAAGGCATGACTATTGTCGAACTTGCTAAGCGTACTGGTGAGTCAATCGCTAGCTTACAGGATGTTCTTGCTAATGTTGGGGAAAAGCC TGGGTCAGAGTTCGATCCTCTTAACATTGATGTCGCGGAGCTCATCGCAATGGAGGTGGGGGTGAATGTTAGGAGGCAACATTCATCTGAAGGCACACAG GTTCTTCCACGCCCTCCAGTTGTAACCGTCATGGGCCATGTTGACCACGGAAAGACTTCTCTTTTAGATGCTCTACGACAAACATCAGTGGCTGCCACTG AAGCTGGTGGCATCACACAACACCTTGGTGCTTTTGTGGTAGGGATGACGTCAGGGGCATTTATCACATTCCTCGATACACCTGGTCATGCCGCATTTAG CGCAATGCGAGCAAGAGGTGCTGCAGTGACCGATATAGTTGTTCTTGTCGTTGCTGCTGATGATGGTGTGATGCCTCAAACCTTGGAAGCCATGGCCCAT GCAAAAGCAGCTAATGTGCCGGTTGTAGTTGCTGTTAACAAATGTGACAAACCGGCTGCAGATCCGCAGAGAGTTAAAGTACAGCTCGCCTCTGAGGGGT TACAGCTGGAGGAAATGGGTGGCGATGTTCAGGTAGTCGAAGTATCTGCTGTTAAGAAAACTGGTCTGGATGACTTGGAGGAATGCTTGCTTCTTCAGGC AGAGATGATGAACCTTAAGGCCCGTGTTGATGGACCTGCCCAAGCTTATGTTGTGGAGGCAAAACTTGACAAAGGGCGAGGACCACTAGCGACAGCAATA GTAAAGGCGGGAACTTTGGTCTCCGGGCAGTACATTGTTGTGGGATCAGAGTGGGGAAGGATAAGAGCAATCAGGGATATGGCCGGGAAGGTGGCACAAC AGGCGACGCCTGCAATGCCGGTAGTGCTTGAAGGGCTGAAGGGGCTTCCCAAGGCTGGAGATGATATTATTGTCGTGGAATCTGAGGAACGAGCTAGAAT GCTTAGCGATGGGAGGAGAAGGAAATTCGAGAAAGATCGGCTTATACAGATTATGGAAGAAAGGACAGTGGTTGAGGAACCACTGTCAGAAGAAGATGGA CCTGTAGCTGTGAGGGTTGAATTGCCTATAGTGGTCAAAGCAGATGTTCAAGGAACTGTCCAGGCTGTCACAGATGCATTGAAGACTTTGAACAGTCCTC AGGTTTTCGTAAATGTAGTCCATGTTGGAGTTGGGCCGATTACTCAGTCGGATATCGACTTAGGACAGGCCTGTGGTGCATGTATAATTGGATTCAATGT CAAAACTCCGCCCGGTTCAGTCAGTCAAGCAGCAACCAAATCCGGAATTAAGATTATGTTGCACAGAGTGATCTATCGCCTGTTGGAGGACATCGGCAAC TTGATTATCGAAAAGGCCCCCGGAACTTCCGAAACTCAAGTGGCTGGTGAGGCCGAGGTTCTAAGCATCTTCGAACTTAAGGGGAGGAGTAAAGCAGCAG GCGGTGATGTGAAAATTGCCGGCTGCAAGGTGATAGACGGCAAAGTCACAAGAGCATCGACAATGAGGCTACTGAGGAGTGGAGAGGTCATATTTGAAGG GTGCTGTTCATCCCTCAAACGAGAGAAACAAGATGTGGAAGTAGTCCCGAAAGGAAACGAATGTGGGATGGTGTTCAGAGATTGCGACGATTTCCGAGTT GGAGATGTCATCCAGTGCTTGGAACAAGTTGTTCGGAAGCCAAAGTTCATCTCCTCGCAAAGTGGTGCAGTTCGGATCGAGTGCTGA
AA sequence Show only first row Show all	>Lus10033933 pacid=23154879 polypeptide=Lus10033933 locus=Lus10033933.g ID=Lus10033933.BGIv1.0 annot-version=v1.0 MAWRAVGEKGIKNSLNKAFTLSSCGHVVGATSKVNRDFTVRSISAFSSDRKGFTWCSCSSGTSHDDVLAKEFFIRHFHGTPSLFSRKEIDKALGFKTERK GKFKRKDKSQMKPPVEAKYVLPKLKQSMKQDKTVDIFEGMTIVELAKRTGESIASLQDVLANVGEKPGSEFDPLNIDVAELIAMEVGVNVRRQHSSEGTQ VLPRPPVVTVMGHVDHGKTSLLDALRQTSVAATEAGGITQHLGAFVVGMTSGAFITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMAH AKAANVPVVVAVNKCDKPAADPQRVKVQLASEGLQLEEMGGDVQVVEVSAVKKTGLDDLEECLLLQAEMMNLKARVDGPAQAYVVEAKLDKGRGPLATAI VKAGTLVSGQYIVVGSEWGRIRAIRDMAGKVAQQATPAMPVVLEGLKGLPKAGDDIIVVESEERARMLSDGRRRKFEKDRLIQIMEERTVVEEPLSEEDG PVAVRVELPIVVKADVQGTVQAVTDALKTLNSPQVFVNVVHVGVGPITQSDIDLGQACGACIIGFNVKTPPGSVSQAATKSGIKIMLHRVIYRLLEDIGN LIIEKAPGTSETQVAGEAEVLSIFELKGRSKAAGGDVKIAGCKVIDGKVTRASTMRLLRSGEVIFEGCCSSLKREKQDVEVVPKGNECGMVFRDCDDFRV GDVIQCLEQVVRKPKFISSQSGAVRIEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	0	1
AT5G15810			N2,N2-dimethylguanosine tRNA m...		Lus10005696 [exp]	3.0	0.8779
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	4.2	0.8746
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	5.5	0.8585
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	10.2	0.8539
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	13.4	0.8280
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	14.0	0.8037
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	14.4	0.8376
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	14.5	0.8357
AT4G37190			unknown protein		Lus10011023 [exp]	15.2	0.7727
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	15.5	0.8171

Compare expression of checked genes

Lus10033933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.