Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53340 415 / 8e-146 Galactosyltransferase family protein (.1.2) AT4G32120 303 / 6e-102 Galactosyltransferase family protein (.1) AT2G25300 295 / 1e-98 Galactosyltransferase family protein (.1) AT1G32930 265 / 3e-86 Galactosyltransferase family protein (.1) AT1G05170 257 / 7e-83 Galactosyltransferase family protein (.1.2) AT1G77810 251 / 9e-81 Galactosyltransferase family protein (.1.2) AT4G26940 244 / 6e-78 Galactosyltransferase family protein (.1.2) AT2G32430 239 / 5e-76 Galactosyltransferase family protein (.1) AT1G11730 238 / 1e-75 Galactosyltransferase family protein (.1) AT1G22015 236 / 5e-75 DD46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032350 [exp] 625 / 0 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10014945 [exp] 431 / 5e-152 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 376 / 3e-130 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10001920 [exp] 266 / 2e-86 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10033248 [exp] 248 / 2e-79 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10020042 [exp] 246 / 2e-79 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 247 / 6e-79 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10008282 [exp] 244 / 4e-78 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 244 / 6e-78 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136000 [exp] 488 / 1e-174 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 447 / 2e-158 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G257200 [exp] 300 / 2e-100 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 296 / 5e-99 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 251 / 8e-81 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 251 / 9e-81 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.014G153700 [exp] 251 / 1e-80 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 249 / 4e-80 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 241 / 9e-77 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 239 / 6e-76 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033935 pacid=23154720 polypeptide=Lus10033935 locus=Lus10033935.g ID=Lus10033935.BGIv1.0 annot-version=v1.0 ATGTACAGCCGGGCGTCCACTGGCCGGGGTTCCGGCTCCGCTTTCGCATCTCGACTTTCGTATCTTATGCTGACGATGTTCGCGTTCATGGCTGCGATTT ACGTCGCCGACCGTTTGTGGCAGGATGCTGAGAACCGAGCACGATTGCTTACGGAGCTTGACAAGAGATCTGGTCAGGGCGAATCGGCTATATCAGTTCA AGATACGCTGAAAATTATAGCTTGCAGAGAGCAAAAGAAGAAGTTGTCTGCAATTGAAAAGGATCTGGCTGCAGCAGGACAGAATGGATTTGCATCTAAG CATTCTACTGTGGAAAATAGTTTTCAACCGAAGAAAAGGCTCCTTGCTGTTATCGGTATAATGACAACCTTTGGCAGGAGGAAAAACAGAAATGCTATTC GGAAGGCATGGATGCCGATTGGTGGAGCTCTTAAAAAACTGGAGGATGATAAGGGCATCGTATTAAGATTTGTAATAGGCCGAAGTTCGATTCCTGGAGA CAATTTGGACAGGGACATCGACATCGAAAATAGGCAGATGAATGACTTCATCGTTCTTGATAATCAAGTGGAAGCAACAGAGGAAAAGCACACAAAGACC AAAAATTTCATCGCACAAGCTGTAGACAAATGGGATGCCGAGTTCTATGTTAAGGTCAATGATGATGTTTATTTAAATATCGAAGCTCTTGGCGCAACAC TTTCCACTTTTGTCGGGAAGCCACGCGCTTATATTGGCTGTATGAAATCAGGAGAAGTCTTCTCCGACCCGACCCACAAATGGCATGAACCAGACTGGTG GAAATTCGGCGATGCGAAATCATACTTCCGTTATGCGTCAGGTGAAATCTACACAGTTTCACGAGCTTTGGCTCAGTTTGTTTCAATCAACAAGTCTTTG CTTCGCACATACGCCCACGAGGATGTCTCCACTGGATCATGGTTCATCGGACTTGATGTAGCTCACATTCATGAAAAAAAATTCTGCTGCTCTTCATTCA GAAAGGGTATACCTGTCCGAAATTAA
AA sequence Show only first row Show all	>Lus10033935 pacid=23154720 polypeptide=Lus10033935 locus=Lus10033935.g ID=Lus10033935.BGIv1.0 annot-version=v1.0 MYSRASTGRGSGSAFASRLSYLMLTMFAFMAAIYVADRLWQDAENRARLLTELDKRSGQGESAISVQDTLKIIACREQKKKLSAIEKDLAAAGQNGFASK HSTVENSFQPKKRLLAVIGIMTTFGRRKNRNAIRKAWMPIGGALKKLEDDKGIVLRFVIGRSSIPGDNLDRDIDIENRQMNDFIVLDNQVEATEEKHTKT KNFIAQAVDKWDAEFYVKVNDDVYLNIEALGATLSTFVGKPRAYIGCMKSGEVFSDPTHKWHEPDWWKFGDAKSYFRYASGEIYTVSRALAQFVSINKSL LRTYAHEDVSTGSWFIGLDVAHIHEKKFCCSSFRKGIPVRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	1.4	0.9774
AT5G05450			P-loop containing nucleoside t...		Lus10040952 [exp]	1.7	0.9664
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	2.8	0.9664
					Lus10040842 [exp]	2.8	0.9694
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	3.2	0.9637
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	7.4	0.9331
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10036948 [exp]	8.0	0.9297
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	8.5	0.9586
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	9.0	0.9439
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	9.8	0.9125

Compare expression of checked genes

Lus10033935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.