Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 713 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 549 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 542 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G53320 503 / 2e-172 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 495 / 4e-169 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 491 / 3e-167 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 490 / 1e-166 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 486 / 5e-166 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 397 / 1e-130 RLK902 receptor-like kinase 902 (.1) AT1G48480 393 / 3e-129 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032351 [exp] 1103 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 655 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 654 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 595 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 578 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 556 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 550 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 550 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 545 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136100 [exp] 845 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 829 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 687 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 676 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 556 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 547 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 530 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 529 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 506 / 3e-173 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 408 / 3e-135 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033936 pacid=23154768 polypeptide=Lus10033936 locus=Lus10033936.g ID=Lus10033936.BGIv1.0 annot-version=v1.0 ATGGAAGCTAAGCTTCTTGTTAATGTTCTCTCTTGCGGTTTTCTCTTCTTCGTGAGCGTTGTTCTTCTTCACGGAGTAAAAGGAGAGCTAGTTGAAGAAG ATAAGCAAGCTTTGCTGGATTTCATGGCCAAATTCCACCACTCGAGAGCACTGAACTGGAACGAGAGCTCCTCAGTTTGCAGCAACTGGACTGGAATTAC TTGCAGCCAAGATGGTTCAAGAGTGATTGGAGTTAGGTTACCTGGCGTTGGATTCCAAGGCCCTATTCCGCCAAACACTCTCAGCCGTCTCTCAGCATTG CAGGTTCTAAGCCTTAGATCCAATGGAATCAGTGGGAACTTCCCTTCTGAATTGTCAACTTTAAAGAACCTGTCTTTCCTCTATTTGCAATTCAACAACC TGTCCGGAGCTTTACCAGCTGATTTCCCTGTTTGGAACAACCTCACCATTGTCAATTTGTCCAACAACATGTTCAATGGTAGTATCCCGTCCAACAATAA CCTCTCTGGTGAAATCCCTAGTTCCCTTACTAGATTCCCAATTTCAGTCTTTGCTGGTAACAATGTTTCACTTGGAAGTCATTCGAATCTTCCAGCTTTC AACCCTCCTTTGCGAGAATCTGGTAAAGGGCTTAGTGAAGCAGCATTGTTAGGGATCATAGCAGCAGCATGTGTTGTAGGATTGGTAGGTTTGTCTTTCT TGCTCATTGTTTGTTGCTCAAGGAAGAAAAGGCTGGACGAGTTTTCCCTCTCCGGGAAGTTGCAGAAGGGAGGGATGTCTCCGGAGAAAATGGTGTCGAG AAATCAAGATGCTAGCAACAAATTGGTGTTCTTTGATGGATGTAACTATGCATTTGATCTGGAGGATCTGTTAAGGGCTTCTGCTGAGGTTTTGGGGAAA GGGACATTTGGTATGGCTTATAAGGCCATCCTGGAAGACACTACCACAGTAGTGGTTAAGAGGCTGAAAGAAGTGAGCGCTGGGAAGCGTGATTTCGAAC AACAGATGGAAATCGTTGGAGGCATTAGGCACGAGAATGTGGTCGACTTGAAGGCTTATTACTACTCCAAGGACGAGAAGCTGATGGTTTGCGATTATTT CAGCCGCGGAAGTGTCTCCGCTATGCTTCATGCGAAAAGAGGATCGGAGCGAATGCCATTAGACTGGGACACGAGGATGCAGATCGCGATAGGTGCAGCT CGAGGCATATCCCGAATCCACCAAGCAAACAGCGGGAAGTTCGTCCATGGAAACATCAAATCCTCAAACATATTCCTCAACTCAAACAACTACGGCTGCA TCTCCGACGTCGGCCTCTCAACAGTGATGAGCCAGCTCGCTCCGCCAATCTCACGTGCAGCTGGCTACCGAGCACCAGAGGTCACAGACACTAGAAAAGC CACGCAGCCTTCGGATGTCTACAGCTTCGGAGTGGTCCTGCTTGAGCTCCTCACTGGGAAATCTCCCATCCACACCACGGGTGGGGACGAGATCATCCAC TTGGTGAGGTGGGTTCATTCGGTGGTGAGAGAAGAGTGGACTGCCGAAGTGTTTGATGTCGAGCTGCTAAGGTATCCGAACATCGAAGAAGAAATGGTCG AGATGCTGCAGATCGCAATGTCTTGCGTGGTGAGGGTTCCTGACCAGAGGCCTAAGATGGCCGAGGTTGTGAAAGTGATCGAGAGCGTTCGACAGGGAGA TGTTAACGAGAATCGGACATCTACGGGGACTTCAACTCCGCAGCATACATCATCGACACCAGTGCCAACTGTCGAATCATCGTGA
AA sequence Show only first row Show all	>Lus10033936 pacid=23154768 polypeptide=Lus10033936 locus=Lus10033936.g ID=Lus10033936.BGIv1.0 annot-version=v1.0 MEAKLLVNVLSCGFLFFVSVVLLHGVKGELVEEDKQALLDFMAKFHHSRALNWNESSSVCSNWTGITCSQDGSRVIGVRLPGVGFQGPIPPNTLSRLSAL QVLSLRSNGISGNFPSELSTLKNLSFLYLQFNNLSGALPADFPVWNNLTIVNLSNNMFNGSIPSNNNLSGEIPSSLTRFPISVFAGNNVSLGSHSNLPAF NPPLRESGKGLSEAALLGIIAAACVVGLVGLSFLLIVCCSRKKRLDEFSLSGKLQKGGMSPEKMVSRNQDASNKLVFFDGCNYAFDLEDLLRASAEVLGK GTFGMAYKAILEDTTTVVVKRLKEVSAGKRDFEQQMEIVGGIRHENVVDLKAYYYSKDEKLMVCDYFSRGSVSAMLHAKRGSERMPLDWDTRMQIAIGAA RGISRIHQANSGKFVHGNIKSSNIFLNSNNYGCISDVGLSTVMSQLAPPISRAAGYRAPEVTDTRKATQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIH LVRWVHSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMAEVVKVIESVRQGDVNENRTSTGTSTPQHTSSTPVPTVESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	0	1
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	2.0	0.9122
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	3.9	0.9046
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	6.3	0.9187
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	6.7	0.9026
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	8.1	0.9012
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	9.5	0.8566
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	9.8	0.8966
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	10.5	0.8907
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	11.7	0.9036
AT1G22030			unknown protein		Lus10015473 [exp]	17.7	0.8867

Compare expression of checked genes

Lus10033936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.