Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53250 38 / 0.0002 AGP22, ATAGP22 arabinogalactan protein 22 (.1) AT5G24105 37 / 0.0004 AGP41 arabinogalactan protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032355 [exp] 76 / 6e-18 AT3G61640 60 / 9e-13 arabinogalactan protein 20 (.1) Lus10000542 [exp] 39 / 0.0001 AT2G46330 63 / 6e-15 arabinogalactan protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094700 [exp] 38 / 0.0003 AT2G46330 57 / 7e-13 arabinogalactan protein 16 (.1.2) Potri.003G136600 [exp] 37 / 0.0005 AT5G53250 55 / 7e-12 arabinogalactan protein 22 (.1) Potri.014G094800 [exp] 37 / 0.0006 AT3G61640 42 / 1e-06 arabinogalactan protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06376 [flax] [poplar] AGP Arabinogalactan peptide
Representative CDS sequence Show only first row Show all	>Lus10033939 pacid=23154842 polypeptide=Lus10033939 locus=Lus10033939.g ID=Lus10033939.BGIv1.0 annot-version=v1.0 ATGGCAGTTTCAAGAATGGGCGTGGGAGCTATTGCCGTCTTCCTAATCTTCGCCATTGCCTTGCCTGCTGCAGTTCAGGCCCAGATCACGGCTCCTGCTC CTGCACCCACCAGCGATGGGACGTCGATTGACCAAGGGATTGCGTATGTGTTGATGCTGTTGGCTTTGAAGGAATGTGGTGGTGGGATGGATGTTGTGGC TGATGTTAATGATATCATCTTGTTTGGTGGCTTGTCTTTTCTCTACCTCATCAAAACTTTAGCTCCACAAAATCACTTGGTCGGATCCAACTTCTTGAGC ATTGAACTGTCATCTCTTTGGCGATGTTATGCCTACGGTGACGGCGAAGACCGAGTTATTGTGCTGTGTACCCACATTGGGGATCAATGCATGTTATGCC CTCCTAAGATTTGCAATGGACATGGTGGCGACTCTAGGGTTCCAAAACTCACACTTTATGGCCCTTGTGGGTTGCTCATGGTTCACTGA
AA sequence Show only first row Show all	>Lus10033939 pacid=23154842 polypeptide=Lus10033939 locus=Lus10033939.g ID=Lus10033939.BGIv1.0 annot-version=v1.0 MAVSRMGVGAIAVFLIFAIALPAAVQAQITAPAPAPTSDGTSIDQGIAYVLMLLALKECGGGMDVVADVNDIILFGGLSFLYLIKTLAPQNHLVGSNFLS IELSSLWRCYAYGDGEDRVIVLCTHIGDQCMLCPPKICNGHGGDSRVPKLTLYGPCGLLMVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	1.7	0.9819
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	2.0	0.9787
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	3.5	0.9729
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	3.9	0.9743
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	4.2	0.9708
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	4.9	0.9769
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	4.9	0.9786
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	4.9	0.9721
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10035244 [exp]	6.5	0.9421
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	6.5	0.9722

Compare expression of checked genes

Lus10033939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.