Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64300 797 / 0 Protein kinase family protein (.1.2) AT5G41730 775 / 0 Protein kinase family protein (.1) AT1G01450 410 / 2e-136 Protein kinase superfamily protein (.1) AT3G46930 105 / 9e-24 Protein kinase superfamily protein (.1) AT1G62400 102 / 2e-23 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 102 / 9e-23 Protein kinase superfamily protein (.1) AT4G31170 97 / 3e-21 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 97 / 4e-21 Protein kinase superfamily protein (.1) AT5G57610 98 / 9e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G01850 94 / 2e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032357 [exp] 1172 / 0 AT1G64300 581 / 0.0 Protein kinase family protein (.1.2) Lus10036439 [exp] 564 / 0 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10041114 [exp] 563 / 0 AT1G64300 600 / 0.0 Protein kinase family protein (.1.2) Lus10032356 [exp] 345 / 5e-115 AT1G64300 268 / 4e-86 Protein kinase family protein (.1.2) Lus10041113 [exp] 168 / 1e-46 AT1G01450 187 / 8e-56 Protein kinase superfamily protein (.1) Lus10025092 [exp] 112 / 5e-25 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 108 / 2e-24 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10001315 [exp] 103 / 1e-22 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10018895 [exp] 102 / 1e-22 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137000 [exp] 934 / 0 AT1G64300 781 / 0.0 Protein kinase family protein (.1.2) Potri.014G095200 [exp] 739 / 0 AT1G64300 749 / 0.0 Protein kinase family protein (.1.2) Potri.007G060600 [exp] 116 / 7e-27 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 108 / 6e-25 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 107 / 1e-24 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 108 / 2e-24 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 107 / 3e-24 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 107 / 3e-24 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.006G279900 [exp] 105 / 4e-24 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 103 / 3e-23 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF06760 [flax] [poplar] DUF1221 Protein of unknown function (DUF1221)
Representative CDS sequence Show only first row Show all	>Lus10033941 pacid=23154845 polypeptide=Lus10033941 locus=Lus10033941.g ID=Lus10033941.BGIv1.0 annot-version=v1.0 ATGGAGCAGTTCAGGCATGTAGGGGAAGTCCTGGGGAGCCTAAAGGCATTAATGGTGTTACAAGACAACATCCCGATCAATCCTCGACAATGCGGGCTGC TGCTCCAAATGTTCACCTCCGCATTCGACGTGATAGCCGAGGAGATCAAGCACAACCTCACGCTTGAAGAGAAGAACACAAAGTGGAAGCCATTGGAGGA GCCGTTGAGGGAGCTTCATAGGGTGTTCAAAGAAGGGGAGCTCTACGTCAGGCATTGCATGGACAACAAAGATTGGTGGGGGAAAGCTCTTTCTCTCCAT CAGAACAAGGACTCCGTCGAGTTCCACATCCATAACTTGATCGCCTGTTTCCCCGCTGTGATCGAGGCGATCGAGACTGCCGGCGAGATCTCGGGGCTAG ATGAAGCTGACATGAAGAGGAAGAGGGTGATGCTGTCGAAGAAGTACGATAGGAGCTGGTACGATCCGAAGCTGTTCCAATGGAGATTCGGGAGGCAGTA TTTGATTCCCAGAGAGATTTGCTGTCAGTTCAAGGCTGCTGTGAGGGAGGATAAATGGCACTTGATTGAGAAGTTGAAGGAGAAGAAAGCTTCGGGGTTG GTCTCGAAGAACGAGCATCGACTAGTGGATTTGCTCTTGAAGAAGCTTAACTCTACTGAGAGGGTTAACGGGAAGTTACCTCCGAGTTCGATCTTGTTTG GAGGGGAGGATTATAAAGTGAGGAGGAGGCTAGGGGAAGGAAGCCAGTACAAAGAGATTCAATGGCTAGGAGAAGTATATGCAATGAGGCATTTGTTTCA TGAGATTGAGCCGTTGAGTTCCGAGATTTATGACCTGATGTCGCTTGCTCATCCCAACATTGTTCAGTACTACTGCGGATTCTACGACGAGGATAAAAAG GAGTGTTTCCTTGTGATGGAGTTGATGAGCAAGGATCTATATTCTTACATGAAAGAGAACAGCAGTCCAAGGAAAAGGGTTCTTTTGCCTCTCCCTATTG TTGTGGATATCATGCTTCAGGTTGCTAGAGGAATGGAGTTTCTCCATTCCAGGAAGATCTACCATGGTGATTTGAACATCACTAACATCTTTCTGAAACC AAGGAAATCCACAGAAGGCTACTTCTCGGTTAAAGTTTCGGGCTTTGGTCTGACAAGAGTTGAAAACCAACCTTTGAAGCATGCTTCTCCGAACCCGGAT CCAATCGATCCGACTATTTGGTATGCACCTGAAGTTCTGGCAGAACAAGAGAAAGGAGGAAACTTGGCGTGTAAGTACACGGAAAAGGCAGATGTTTACA GCTTCGGAATGCTGAGTTTCGGGCTCCTAACTGGTAAGCTTCCTTTCGAGGATGGGCATCTCCATGGAGATCAAATGATCAAGAACATTAGAGCTGGAGA AAGACCATTGTTTCCCTACCTATCACCAAAGTACCTTGTGAATTTGACTAAAAAGTGCTGGCATACGGATCCAAACTCTCGTCCTAGCTTCACCTCCATT TGCAGGATTCTTCGATACGTAAAGAAGTTCTTGATCATGAATCCAAGCGATGGCCAGCCGGATATGCACTTGCCACCTGTCGACTACACTGACCTTGAAT CAGGATTCCTGAAGATGTTCCCTGCAGACACAACCTGTGATTCGAGCTCGGTTTCTCAGATTCCATTTCACATGTTTGCTTACAGACTGGTTGAGAGAGA AAAGACATCATTAGGTGTCAAGTTCAAGCAAAGTGAACCACCCACTGAGGCAGTTCCTAATGGTCCCGACGAGCCACATCATATCCTTGCAACTGAGGAT CCAGCTGAAGAGTCCAAAATCGTTCTTTTCGATGCGAAGTCGGTTCTCGTGGCGAGTCCTGAGAAGCAATTCCCATCAGATATGAGGTCAGTTATTTCGG AGCCACCTAATAAAAATGCAAGTCCTGTCAGGAAGAAGCCAGCCAACGTTAAGGGTCTCTATTGGTGCTTTGCAGTAATTGAAGCAGCAAAACCAAAGCT GAAAACGCCAGTGAGGTCACCAGCACCAGTGAGATTATCAGCAACTTGTAGCCCAACTGGCCGCAATTCGAGGGCGAACACCAAAGTCAGTCCGAAAAGA ACAACACCATCAATGGCTTCTCAGAATCCAGGGAAAGGGATATTATATAGACAAAGCTCTCCATAG
AA sequence Show only first row Show all	>Lus10033941 pacid=23154845 polypeptide=Lus10033941 locus=Lus10033941.g ID=Lus10033941.BGIv1.0 annot-version=v1.0 MEQFRHVGEVLGSLKALMVLQDNIPINPRQCGLLLQMFTSAFDVIAEEIKHNLTLEEKNTKWKPLEEPLRELHRVFKEGELYVRHCMDNKDWWGKALSLH QNKDSVEFHIHNLIACFPAVIEAIETAGEISGLDEADMKRKRVMLSKKYDRSWYDPKLFQWRFGRQYLIPREICCQFKAAVREDKWHLIEKLKEKKASGL VSKNEHRLVDLLLKKLNSTERVNGKLPPSSILFGGEDYKVRRRLGEGSQYKEIQWLGEVYAMRHLFHEIEPLSSEIYDLMSLAHPNIVQYYCGFYDEDKK ECFLVMELMSKDLYSYMKENSSPRKRVLLPLPIVVDIMLQVARGMEFLHSRKIYHGDLNITNIFLKPRKSTEGYFSVKVSGFGLTRVENQPLKHASPNPD PIDPTIWYAPEVLAEQEKGGNLACKYTEKADVYSFGMLSFGLLTGKLPFEDGHLHGDQMIKNIRAGERPLFPYLSPKYLVNLTKKCWHTDPNSRPSFTSI CRILRYVKKFLIMNPSDGQPDMHLPPVDYTDLESGFLKMFPADTTCDSSSVSQIPFHMFAYRLVEREKTSLGVKFKQSEPPTEAVPNGPDEPHHILATED PAEESKIVLFDAKSVLVASPEKQFPSDMRSVISEPPNKNASPVRKKPANVKGLYWCFAVIEAAKPKLKTPVRSPAPVRLSATCSPTGRNSRANTKVSPKR TTPSMASQNPGKGILYRQSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64300			Protein kinase family protein ...		Lus10033941 [exp]	0	1
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	16.2	0.8780
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009829 [exp]	17.3	0.8218
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	18.8	0.8453
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029438 [exp]	26.2	0.8213
AT5G01970			unknown protein		Lus10031947 [exp]	54.5	0.8217
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	72.2	0.8304
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	78.1	0.8274
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	80.7	0.7864
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10019987 [exp]	117.5	0.8157
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	152.8	0.8068

Compare expression of checked genes

Lus10033941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.