Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11110 764 / 0 SPA2 SPA1-related 2 (.1) AT2G46340 595 / 0 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT1G53090 336 / 9e-102 SPA4 SPA1-related 4 (.1.2) AT3G15354 330 / 5e-99 SPA3 SPA1-related 3 (.1) AT2G32950 258 / 2e-74 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 107 / 7e-25 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 98 / 2e-21 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 50 / 5e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 49 / 2e-05 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G33340 47 / 4e-05 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032358 [exp] 1128 / 0 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10035332 [exp] 262 / 1e-75 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 262 / 1e-75 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019475 [exp] 230 / 2e-63 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 229 / 3e-63 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019476 [exp] 139 / 4e-34 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10027454 [exp] 120 / 5e-30 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 88 / 1e-18 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005345 [exp] 47 / 5e-05 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094500 [exp] 576 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.003G137100 [exp] 565 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 467 / 2e-148 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.011G119500 [exp] 335 / 1e-100 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.001G399600 [exp] 331 / 6e-99 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.014G159300 [exp] 264 / 2e-76 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 255 / 9e-74 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 249 / 3e-73 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 110 / 8e-26 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 108 / 7e-25 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033942 pacid=23154632 polypeptide=Lus10033942 locus=Lus10033942.g ID=Lus10033942.BGIv1.0 annot-version=v1.0 ATGGATGGAGGTCTTGGGAATGAGGTGGCTCCGGGCGATTTGGTGGATGATGAGGTGCATTTCCGTGGTAAAGAGGCTGAATTCTCTTTGTCATTGAGGC AGCCTGAAGCTTCCAATGTGGTGGAGTGTTCTGATGAGGCGGCTGTTCGTGGTGACGGTGACTATTTGGACAGTTCGTTTGACGTGATTTCCGGGATATT GGAAGGCAGGACTGGTAATGGAAGTGTGGGGGATGGTTCCGGGGCTCGATTTGCTGGTGATGCGGGAAACATGGTGGAGGAGTTGCTGGTTAAGAAGAAT TATGACGGTTCTAACTTGCCTATAGTTGGGATGTCTAACCATAGGGAGAAGTTGGAGTCGAGGTGGACTCAGTGGCAGCCTCATTATCAACTGGGAGTGG GGTCGGGGAGCGGGAGCTGTCGGAGTAATGTTTGGCACATGGATGATGGTCAGACGGCGAGCCCTTGCGAGAATAACAATACGCAGAATGTTTCTTCTTC TGAGTTTATCGGTCAGGGGACGGCATCCAATGATTTGTCTAATGAGGCTGTGGGGCAGTTGGTGGATACGGAACATATGGAGGGTGGTGACATGGTTTCT TGTGGTGGGATTCGGACGAAGATTCTGTCGAAATCAGGTTTTGCTGATTTCTTTATCAAAAATACTCTGAAAGGGAAGGGGACTGTTTTTAGAGGCCATC CTCATAATGTTGCGAGACATGAACCCATGCTCCAGGAAAATGGAAGGACTCCGAATGTCATGGCGACAAGTTGTGGTAGTGCTTCAACGAGTATGGGTGA CAAAACGGCAATGCCTTCAGCCTCGGGTGTCGCCAGGCCGAGGCATGGTGGTGTTGATCATGATGGAGTCAGTTTGAGAGAATGGCTGAATGTCGGGCGT CATGTGGTAGACAAAGTGGAATGCTTTCATATATTTAGGCGGATTGTGGATCTCGTTGATAGCCTTCACTCTAAAGGAGCTGTCTTGACTGAGTTAAGGC CCTCTTGCTTCAAGTTGTTGCCGTCGAAGCAGGTAAGATACCTTGGATCAGCTGATAAAAGAGATGATCGAGGAAGTGCTCTTGATCAAGATGTGCCTTG CTTAGGGAATCATGCTAGTAAGAAGAGGATGATAGACCAAGGATTGTTTTCATCATCTCCTGGTTTACACATGAAGAAACAAAAACTAAGTGAGAACATG AACGCTGCTAAGAGGTGGCCTCAGTTTAGTGTGAAATATGGCTCCAAACTTAAAACTGGAGAAGCTGACTTCGGAATTAGACAGCAATTCCTTAATGATT CTACTGGTGGCAATCCAAATATGGGACATGGAGCTCAGAGCAATCTTAGTTTTCGTAGGCTGTCAAAGGCAGTGCAACAACAACTATCAACCTGTGGTAT GGACCCGGTGGAAGAAAAGTGGTATGCAAGTCCCGAGGAGCTGACTGAAGGAATCCACACGATGTCATCAAATGTTTATGCTTTGGGAGTACTGCTGTTT GAGTTGCTCAGTCACTTTGACTCTGAAGGAGCACGTGCTACCGCTATGTCGGACTTGTGTAACAGGATTCTTCCTCCTCATTTTCTGTCTGAGAATCTGA AGGAAGCTGGGTTTTGTCTTTTGCTACTTCATCCTGAGCCTTCCTCACGTCCGACAACAAGGGAGATTCTGCAATCTGACGTGATTAATGGATTGCCAGA CGTGTCTGTGGAAGAATTGGCATCTGCCATCGAAAAAGATGACGCTCTCAATACGAAAGAGATGAGGTTGATGAGAAATATCAGTCAGCTTGAAAGTGCT TATTTCTCCATGAGGGGAAAAGTCCAAGTTGCTGAGGCTAACCCTACTGCACGCCAAGACAAGTATTTGTTGCGAAATCGTGAAACTTGGCAATCAGAAG AAGAAGCTGAAGGAAATTATAATTCAGCTGATTGCCTCGGAGAATTCTTTGATGGCATGTGCAAATATGCTCGGTATAGTAAGTTTCAAGTACGCGGGTC ATTGAGAACTGGGGAGTTTAACAATTCTGCAAATGTGATTTGCTCTCTAAGTTTTGACCGGGACAATGACTATTTCGCTGCTGCTGGAGTTTCAAAAAAA ATAAAGATATATGATTTTGGTTCCCTCTTTAATGATTCTGTTGATATTCATTATCCGGCTGTTGAAATGTCTAACAAATCAAAGCTCAGCTGCATTTGTT GGAACACCTATATCAAGAATTATCTGGCTTCTACAGATTACGATGGTGTAGTAAAGAAAAATAGTTTAGCCACAATCAGGAACATCGCCAACGTCTGCTG TGTTCAGTTCTCTTCTCACTCGACTCATTTGCTGGCTTTTGGATCTGCGGATTTCCGAACCTACTGCTTTGATATTCGACATGTTAGAATGCCGTGGTGT ACATTAAGTGGCCACGAGAGAGCAGTTAGCTATGTAAAATTTGTGGACGCTGACACTATTGTTACTGCATCGACTGACAACTCATTGAAGCTATGGGATC TTAAAAAGACCAATGGCAGTGGCCTGTCCATGGATGCTTGCAGCTCAACTCTTCGGGGGCACACCAACGAAAAGTTCTCTTTCAAATTCCAGAATTTTGT TGGCCTATCGGTTGCTGATGGTTACATCTCTTGTGGCTCGGAAACAAATGAGGTTTATGCTTACCACAGATCTCTACCGATGCCGATGGCATCTCACAAG TTTGGTTCCGAGGATCCTATTTCGGGCAAAGAGATTGAGGATGACAACGGACAATTTGTTTCAAGTGTCTGCTGGAAGGGGAACTCGGATATGCTCCTAG CTGCCAATTCAAGCGGCTGCATAAAAGTATTGCAGATGGTGTAA
AA sequence Show only first row Show all	>Lus10033942 pacid=23154632 polypeptide=Lus10033942 locus=Lus10033942.g ID=Lus10033942.BGIv1.0 annot-version=v1.0 MDGGLGNEVAPGDLVDDEVHFRGKEAEFSLSLRQPEASNVVECSDEAAVRGDGDYLDSSFDVISGILEGRTGNGSVGDGSGARFAGDAGNMVEELLVKKN YDGSNLPIVGMSNHREKLESRWTQWQPHYQLGVGSGSGSCRSNVWHMDDGQTASPCENNNTQNVSSSEFIGQGTASNDLSNEAVGQLVDTEHMEGGDMVS CGGIRTKILSKSGFADFFIKNTLKGKGTVFRGHPHNVARHEPMLQENGRTPNVMATSCGSASTSMGDKTAMPSASGVARPRHGGVDHDGVSLREWLNVGR HVVDKVECFHIFRRIVDLVDSLHSKGAVLTELRPSCFKLLPSKQVRYLGSADKRDDRGSALDQDVPCLGNHASKKRMIDQGLFSSSPGLHMKKQKLSENM NAAKRWPQFSVKYGSKLKTGEADFGIRQQFLNDSTGGNPNMGHGAQSNLSFRRLSKAVQQQLSTCGMDPVEEKWYASPEELTEGIHTMSSNVYALGVLLF ELLSHFDSEGARATAMSDLCNRILPPHFLSENLKEAGFCLLLLHPEPSSRPTTREILQSDVINGLPDVSVEELASAIEKDDALNTKEMRLMRNISQLESA YFSMRGKVQVAEANPTARQDKYLLRNRETWQSEEEAEGNYNSADCLGEFFDGMCKYARYSKFQVRGSLRTGEFNNSANVICSLSFDRDNDYFAAAGVSKK IKIYDFGSLFNDSVDIHYPAVEMSNKSKLSCICWNTYIKNYLASTDYDGVVKKNSLATIRNIANVCCVQFSSHSTHLLAFGSADFRTYCFDIRHVRMPWC TLSGHERAVSYVKFVDADTIVTASTDNSLKLWDLKKTNGSGLSMDACSSTLRGHTNEKFSFKFQNFVGLSVADGYISCGSETNEVYAYHRSLPMPMASHK FGSEDPISGKEIEDDNGQFVSSVCWKGNSDMLLAANSSGCIKVLQMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	0	1
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	2.2	0.8857
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	2.8	0.8584
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	4.5	0.8280
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	8.2	0.8443
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	9.5	0.8331
AT5G22450			unknown protein		Lus10004878 [exp]	12.1	0.8478
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	14.1	0.8277
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	14.3	0.8212
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	15.5	0.8011
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	16.4	0.8370

Compare expression of checked genes

Lus10033942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.