Plant FIBer expression Database

Lus10033943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033943 pacid=23154736 polypeptide=Lus10033943 locus=Lus10033943.g ID=Lus10033943.BGIv1.0 annot-version=v1.0
ATGGCACATAAATTTTCTAGGGTTCATAGACCGGAGACACAGAAGTGCGGCAGAGCAGCTCGATCGACCTTCTCCGAGTGTGGAAATTCCATCCCCTTTC
TAGAAGTGGAAAGGCTGGTGAAGATATGTTTGGAGGATGAGCTTCGGCAAAGCAAGAATGAGTGCTCGAAGCTGAAGCAGCAGGTTTCTGTACTCCTAGG
TCACGAGATCAAGGTCAAGGAAGTGGAAGATCGACTTGCTCGAGTGTTGCTGCGCGTACGTTGTCAAGTAGACGGTGGCATGGGAAGCTCCGGAGGGGAA
AATCAAGGTGGGGATTTGATGACAGAAGGAAGCATAGAAGCTACTGCTTCAGTGGCAGGAGAGAAGAAGGTGGATGAAGCAAGTAAACTTGATGTGAAGA
AGGAGAATGGAGGAGCTTCCGGACTTGGGATGGATCAACTTGGAGCTGGAAGTCAAGGAACTACTACACCAAAATCAGCCAAAGTCATCATTGATATCCC
CGACAGCGATGACGAATTCACTCCTCCTAAGGCGGCTCCAAAGGAAGTATCCGCCCGACCACATTTGGAACCAGGTCTTTCTGGTGAAGACGAAACTCAT
GTGCTCAAAAGGAAAATGACAGACACTGGCACGAACGATAATAACTCATCTCGAGATAAGAAAAAGATCACAAGAGTTGCAGACTCGATTCCTGGCAACG
ATGGGGAAACAACTTCCGCTCAACAAAAGCTGGATTCGCCACCCAGTTCAATCCAGGACAAGGAGACCATGGATGCCGAACAATTCGCAGATGAACTATT
CACATGGGATATGGCTAGCATGTTTGATGTCGACCCCTCCTCCAGCCCAAGCTCAAGCTCCGACTTTGACTGTATCGATCTTGACCTGGTAATGCATATT
CTAGAAGGACTAAATGGTAAGGACTAA
AA sequence
>Lus10033943 pacid=23154736 polypeptide=Lus10033943 locus=Lus10033943.g ID=Lus10033943.BGIv1.0 annot-version=v1.0
MAHKFSRVHRPETQKCGRAARSTFSECGNSIPFLEVERLVKICLEDELRQSKNECSKLKQQVSVLLGHEIKVKEVEDRLARVLLRVRCQVDGGMGSSGGE
NQGGDLMTEGSIEATASVAGEKKVDEASKLDVKKENGGASGLGMDQLGAGSQGTTTPKSAKVIIDIPDSDDEFTPPKAAPKEVSARPHLEPGLSGEDETH
VLKRKMTDTGTNDNNSSRDKKKITRVADSIPGNDGETTSAQQKLDSPPSSIQDKETMDAEQFADELFTWDMASMFDVDPSSSPSSSSDFDCIDLDLVMHI
LEGLNGKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033943
[exp]
0 1
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Lus10030761
[exp]
2.0 0.8332
AT5G16610 unknown protein Lus10010975
[exp]
2.0 0.8420
AT5G41850 alpha/beta-Hydrolases superfam... Lus10021037
[exp]
2.6 0.8496
AT5G10320 unknown protein Lus10000634
[exp]
7.4 0.8098
AT1G17450 B-block binding subunit of TFI... Lus10015659
[exp]
9.2 0.7956
AT1G62350 Pentatricopeptide repeat (PPR)... Lus10000892
[exp]
9.2 0.7909
Lus10008178
[exp]
9.2 0.7548
AT1G31170 ATSRX sulfiredoxin (.1.2.3.4) Lus10038354
[exp]
9.8 0.8359
AT1G06450 Polynucleotidyl transferase, r... Lus10017895
[exp]
10.2 0.7615
AT3G21810 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10015103
[exp]
11.0 0.7961

Lus10033943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.