Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64320 160 / 1e-42 myosin heavy chain-related (.1) AT5G41780 129 / 1e-31 myosin heavy chain-related (.1) AT5G41790 92 / 6e-19 CIP1 COP1-interactive protein 1 (.1) AT1G64330 49 / 8e-06 myosin heavy chain-related (.1) AT2G30500 47 / 5e-05 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032360 [exp] 1062 / 0 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10033945 [exp] 125 / 1e-29 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032362 [exp] 115 / 9e-27 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10034251 [exp] 47 / 4e-05 AT5G05180 149 / 4e-40 unknown protein Lus10032361 [exp] 46 / 0.0001 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137300 [exp] 242 / 4e-70 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.003G137400 [exp] 124 / 3e-29 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 116 / 1e-26 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.001G094266 [exp] 79 / 5e-17 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.001G094332 [exp] 62 / 4e-11 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.013G158100 [exp] 49 / 9e-06 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G061600 [exp] 45 / 0.0002 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.019G131000 [exp] 44 / 0.0003 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033944 pacid=23154827 polypeptide=Lus10033944 locus=Lus10033944.g ID=Lus10033944.BGIv1.0 annot-version=v1.0 ATGGGTGAAACACAACAAGGAAATGATGAAGAGGAGCATGAAGTTGCAACAACAATGGTGAAGGTTGATGAAGATAGTCATGGTAGTAGAGGAGTTGTTG AGGTAAAAGAGTTAGAAGGACAACTAATTGTCAATAAGTTCGAGATGGAGTCTTTGAGGAAGGAGAAAAGAGAGATGGAATCGTTGCTTGAAAGGAAAGT AAGCGAGGTTAATGAGTTACAATCTCAAATCACAGAAATTAAAGCTCGATACTTTGTAAGAGAAGTAGAAGAAGAAGAAGAAGACGACGATAATAACGAG GTTCCTTCAATCTCGAAACGTATGAAGGACAATGAAGAAAAATACACTTCTCGAATCGAAGATCTCGTAACAGAAGTGACCAGGTTGCAGACGGAGGTGG CGTCATTACACAACATGAAGCAAGACCTCGAGTTGAAACTTGACGAGAAAGCAACCGAAGTAACACAGTGTGGGGAGAGAAACTTACAACTCAATGCCCG TATTTCAGAGCTCGAACACATTTTGGAGACGAAAGTGGACGAAAAAGACTCCATTTTAAAGGAAATGAGAGACAACGGAGAAGAAATGAGGTCTAGAATT GAAAACCTGATAGCAAAAATTGCAACCCTAGAAACAGAGGTGGAGTATGCAACAAGCAAGAAGAAAGATATAGAAGCACAAATGGAAGTAGAGGTAGCAG AATCCAAAGAACTCAAGGACATCAATGAGGAGCTACATGTTCAAATTTCGGATCTCGAGTCAACATTGAAGGAGACATCGAGACTCGTGAGAAAACTCAA GAACAACAAGAGCAAGTTGACCGAGAGAATAACAGAGCTGACCGGACAAGTCACTCAAATGAGCGACAGAACATCCGAACTCGAGCAGTTGCTATCAGAT CGAGAGGGTCAGGTTATCAGCAAAGTAGCATCAATGGAGATTACAAACTTGAAAGAAAAAGTAACCCGCCTACAACAAGAGTTGGACTCTTCGTCTTCCA ATGTGAGTACTGAAAAGCCACATCAAATTATAACGACGTTGAAAGAACCTGATAATCAGGAAACTAGTGGTAGTAAATTGGAGACTACACTTAAACCAAT TAGGCACCTTTCGATGGAATCTCCTAAGGTGAAGACAATGGAGTCCAACAAAACACTTGAGAGGAAGATGGAAGAGTTGGCAGAACAGTACCAAATGAGA ATGGAGAACCACATTCGTCTATTGAGACAGAGAGTCAAAGTTGCTGAACAGATACACAACGAAACCAAAGACCACTACAAGGAGATCAAAGAAGAGCTGG AGCAAGAGAACAAGGAGCTTCATGATAAAGTCGTGGCATTCGAGGATGCGTTGAAGAGGATGAAGGCGACACTCATCGAGCCGGGGGGCACCTTGTTAAC GGGGTTGGACGTTCTGATAAGAAAGCTAGACGAGAGCAAGCACCCGTTGACCAGGGTTTCAAAGGTGTCGGATGAGCTCCAAAATGCTCGAAACTGGATG GCGGGGAAGAAAGGAGAGATCAAGCATTTGAAGGAGAACGTGGATGATCTTACGATGCAGCTGAGCGACAAAGAAGGAAAGGTTTTGGAGCTCGAAGCGA GACTAACCATGGCGTTGACACTAGCGAGCGAGGAAGAGGAGGAGATTGTTGGTTTGATGAGGAAGGTGAAAAGGTTGGAGCAAGAGTTGAGAGGTAAAGA AGAGACAATAATGGGGTTTGGAGAAGAGAAGAAGGAAGCCATAAGACAGCTTTGTATGTTGATCGATTACCATCGAAATCGCTATGACCATCTTAGGCGG ACCATTTCTGTAATGAAGGCTAAGCAAAATGCATTGTCGAGCGCCTAG
AA sequence Show only first row Show all	>Lus10033944 pacid=23154827 polypeptide=Lus10033944 locus=Lus10033944.g ID=Lus10033944.BGIv1.0 annot-version=v1.0 MGETQQGNDEEEHEVATTMVKVDEDSHGSRGVVEVKELEGQLIVNKFEMESLRKEKREMESLLERKVSEVNELQSQITEIKARYFVREVEEEEEDDDNNE VPSISKRMKDNEEKYTSRIEDLVTEVTRLQTEVASLHNMKQDLELKLDEKATEVTQCGERNLQLNARISELEHILETKVDEKDSILKEMRDNGEEMRSRI ENLIAKIATLETEVEYATSKKKDIEAQMEVEVAESKELKDINEELHVQISDLESTLKETSRLVRKLKNNKSKLTERITELTGQVTQMSDRTSELEQLLSD REGQVISKVASMEITNLKEKVTRLQQELDSSSSNVSTEKPHQIITTLKEPDNQETSGSKLETTLKPIRHLSMESPKVKTMESNKTLERKMEELAEQYQMR MENHIRLLRQRVKVAEQIHNETKDHYKEIKEELEQENKELHDKVVAFEDALKRMKATLIEPGGTLLTGLDVLIRKLDESKHPLTRVSKVSDELQNARNWM AGKKGEIKHLKENVDDLTMQLSDKEGKVLELEARLTMALTLASEEEEEIVGLMRKVKRLEQELRGKEETIMGFGEEKKEAIRQLCMLIDYHRNRYDHLRR TISVMKAKQNALSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64320			myosin heavy chain-related (.1...		Lus10033944 [exp]	0	1

Compare expression of checked genes

Lus10033944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.