Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41790 225 / 2e-59 CIP1 COP1-interactive protein 1 (.1) AT1G64330 152 / 2e-38 myosin heavy chain-related (.1) AT5G41780 66 / 1e-10 myosin heavy chain-related (.1) AT1G64320 65 / 2e-10 myosin heavy chain-related (.1) AT1G03080 58 / 5e-08 kinase interacting (KIP1-like) family protein (.1) AT2G30500 54 / 5e-07 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 53 / 1e-06 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT3G22790 50 / 1e-05 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 49 / 3e-05 kinase interacting (KIP1-like) family protein (.1) AT4G02710 48 / 4e-05 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032361 [exp] 1022 / 0 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1) Lus10032362 [exp] 976 / 0 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10033944 [exp] 94 / 4e-19 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 82 / 1e-15 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10006896 [exp] 58 / 6e-08 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 58 / 6e-08 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 55 / 4e-07 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 53 / 2e-06 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10034448 [exp] 52 / 3e-06 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094200 [exp] 436 / 1e-132 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.003G137400 [exp] 373 / 1e-106 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.003G137300 [exp] 155 / 2e-38 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.013G158100 [exp] 65 / 4e-10 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.001G094332 [exp] 59 / 8e-10 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.001G094266 [exp] 59 / 9e-10 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.019G131000 [exp] 59 / 3e-08 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G049600 [exp] 59 / 4e-08 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 59 / 4e-08 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 57 / 1e-07 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10033945 pacid=23154722 polypeptide=Lus10033945 locus=Lus10033945.g ID=Lus10033945.BGIv1.0 annot-version=v1.0 ATGACGAAGCATCGCTGGAAGGAGTCTGTCAAATCCTTTTTTGGGAGCCACATTGATCCAGAGAAAGACGAGCAGCTCCAAGGCAGTAAAGAAGAATTCG ACGATAAATTGAAAAGGATCTTGGAGCTAATTAACGAAGAAGATTCTGAAGTGGAAAGGTCCAAAAGAAAGCCTCTTGTGGACTTAATTGAGGATTTTCA CAATCAGTATGAATCGCTATATTCACGATACGATCATCTTACAGGAGAGCTGAGGAAGAAATTTTATGGGAAGAAGAGGGGGTCGGACTCCTCTTCTTCA TCTAGCTCAGACTCGGATTCCGATGACGATTCAAAGGACAAAAGCGGCAAAAATGGACGACTTGAAAGAGGCAAACTAACTGACGGCATTAAGAAAGAAC TTGAAACCGCCAGTCTTGAAGTTGCTGAACTGAAGGGTAAGGTTGCTGCTGCAACCGAAGAAAAGGATGCGTTATATCTCGAGTATCAATCAGCATTGAG CAAGATTGAAGAAGCAGAAGCGATTGCCAAAAGCATGAAGGTTGAATTAGAAACAATAAATGCCGAAAAGGTGAAAATTCTCGTCGAGAACGAAGAACTG ACGCAGAACCTCAATCAGGCTGGCAAGACAGAAGCAGAACTGAATCAAAGATTAGAAGATATAGCCAAAGAGAAAGAAGGTTTGACCGCAGAGAAAACAG CTCTCTTGGAAAGGATTGAAGAAGAAGAGAAGATCAAAAGAGAATTGAGGATGGCGAGTGATAGGCTGGCAGATGAGAGAGTGGTTCTTTCCAAAGAACT TGAAAGTCTCAAGGGAGAAATTTCCACATTAAACGAGAAACTGAAATCATCAGAGGTGGTTATGTCGAATTTGACCCAGAATTCGACAGTTGCAGAGGAA GAGAAAAAATCTATGGTGACCGAAATTTCTGTACTAAACCAGAAGTTGGAAGAGATGAAATTAGAGAAGGATAGTCTCGTTTCCGAGAAGGAGACTGCAA CACAGAGAATCCTAGAAGAAGAGAAGGTCACAGCCGATCTAAGAGATTTGGCAGACAAGTTCCAAGGTGAGAATTCATCTCTTAAGCATGAACTAGAAAC CATTACAAATCAACTCATTGACACGAAAAAGCAATTAGAATCTGCGGAGCAAATGGGTTCAGATTTTTCCGCGAAACTGAAGGTTGCCGAGGAAGAGAAT GCTTCTCTAGCGTCCAGAGTTTCACAGACTCTAGATGAATTGCAGAGTACTCAAAACACCGTACAGGAACTCAATACTCTATCAAGTCAGTTAGAAGAGA AATTGGATGGGAAGGAAAAAGAGGTTTCATCTCTTACGCAGAAGTACGAGGCACTTGGTGTCGAATCCGCAATCCAGGTGACAGAATTGGAGTCACAGGT CGCCACCGTGGAATTAAAATTGGCTGGAATGTCTGAACAGAACAGAGAACTGGAATTGGAGGTCCAGACCAAAATTGATGAAGCGAGCCAACTGGTGGGA GAGAATGGAAAGCTACAGAGCCAAATTCTGGAACTTGAGAAGATATCAAAGGATAGAGAAGTTGAAATCTCAGAACTGGCAAGGAAACTTGAGGAAAACG AAAGAGAATCTTCAGCTAGATTTGTAAGCTTGACATCAGAGGTTACAACCCTACTGGCTGATTTGGAATACATGGGTGGTCAGAAAGCTGAGCTCGAAAA ACAGTTGATAAGCAACAGTGATGAAACATCGAACCAGTTGAAAGTCTACATCGATCAAGTCAATGAACTCCAACAGCAACTGCAGACTGTACACAGCCGA AAAGTTGAACTGGAAGAGCAACTCCAGAGCAGAATAGAAGCAAATTCAGAAATTCTGATACAGATGGAAAAGCTGAAAGAAGAAATTGCATGCAAGACCG AGGATCATCAGAAAGTAGTGGCAGATTTGGAATCAATGAGTGGTCAGAAAGCAGAGCTCGAAAAACAGATGACAAGCAGCAGCGAAGAGGTAGCAAACCA GTTGAAGGTTTTGATGGATCAAGTCAGTGAACTGCAACAGCAACTGCAATCTGTAGAAAGCCAAAAAGTTGAACTGGAAGTCCAGCTCCAGAACAGGATC GCTGAAACTTCAGAATATCTGATACAGATAGAAAAACTGAAGGAAGAAGTAGTTAGCAAGGCTGAAGATCATCAGAAAGTACTGGCCGAATTTGAATCAC TGAGTGGTCTGAAAGTGGAACTCGAAAAACAGATGACCAGCAGCAGCGAAGAAGCATCAAACCGGTTGAAGGTCATTATGGATCAAGTCAACGAACTGCA GCAACAACTGCAGTCTGTAGACAGCCAAAAAGATGAACTAGAAGTCCAGCTCCAGCACAAGATTGCTGAAAATTCAGAAGCTTCGGCACAGATAGAAAAA CTGAAAGAAGAAATATCAGGCAAGGCTGAGGATCATCAGAAAGTACTGGCAGATTTGGAATCTATGAGTGGTCAGAAAGCGGAACTGGAAAAACAGATGA CCAGCAACAGCGAAGAAGCATCAAACCAGTTGAAGGTCTTCATGGATCAAGTCAGTGAACTGCAACTTCAACTGCAGTCTGTAGGCAGCCAAAAGGTTGC ATTGGAAGTGCAACTCCAGAACAAGACAGAAGCAAATTCAGAATCTCTGATACAGATAGAAAAGCTGAAGGAAGAAGTAGCTGCCAAGGCTGAAGATCTT GAGAAAGTACAGATGGAGAAAGATCATCTAACGGAAAAGATAAAGGAGCTGATTTTGGAAATAGAGACTCTAGGCAACCAGAAGAACAATCTCGAACAGG AAGTAAGAAATCACATCGAAGAGATCGCATCTCTGAAGGACGAAATGTCGACTTTACACGACAGAGTTTCCGGAATGGACCAGACAATCTCAGAAAGAGG GCTGGAGTTCTCTGCCCTCCATGAGAAACACACGAGTAGAGAGACTGAAGTTTCTGCTGAGATAACGTCTCTCAAGGAACAAGCAAACAGTCTACAACAA GAACTCGATTCGCTGCGGAACGAGAAGAACGAACTACAAACACAACTCGAAAAAGACCAGCGTGAATTTTCATCAAAGTTGACCGAAATGGAAAATCAGA AGACTGAGTTGGCAACTCAGGTTGCTGATCTGCAGAAATTGCTGGACGAACAAGCTGAATCATACAAGAAACTAAGCGACGACTACAAACAAATAGAAGC TCTGTACGAGGACAGCAAGGCTAATGCGAAATCGGCAGAAAAGAATGCAAACGATCTCAACAAGCAAGTTGCCGAGTTACTGGAGACAATCGAGAGTCAG AAGCGAGACATCGAATTCAAAGGCGAAGAGCTACGAAGTCTAGGCGACAAGAACAACAACATCGAAGTGAAACTTCGACTCTCGAGCCAGAAAGGCCGTG TCACCGACCAATTACTGAGCGAACAAGAGGAAACGTTCAGGAAAGAAGAAGCCAAATACAAGGAGAAGCAGAGAGAGCTGGAAGCAAGAATATCGTCGCT CTCATCTACTCTTGCTGTAACTAAAGAAGCTCATCGCAAAATGGTGACCGAACTCTCCGACAAACTTCACGGCGCCATTACAGGATTGGACACTCTGTCG TCCAGATTCGACGAGGATTGCAACCGGTATCAGCACCGCGTCATGGAGATGTCTCGCGAGGTTCAGATCGCCAAAGGATGGGTGGTCGCCATGAATAAGA AGATTGAGAAGTTGAAAAAGGAAGCGAACAGCTCAGCCTTACAATTGAAGCACGCAAGGGAACAAGAATCTGCATTGAAGATAGCAGTGGGGGAGTTGCA GGCCAAGGCAAGCAGAGAGGAAACAGAGAAGCATAATCTCACCAAAGCCATGGCAGCCATGGAAGCAAGCATGAAGGAGAAAGATGAAGGAATATTCCAC CTGGGAGAAGAGAAACGAGAAGCCATACGGCAGCTTTGCATCCTGATTGATTATCACCGCGTCCGATACGACGGCATAATCGAAAGCTTACTCTCCAAGG TTCCAGGCAGACGGCAGAGAGCAGCTTAG
AA sequence Show only first row Show all	>Lus10033945 pacid=23154722 polypeptide=Lus10033945 locus=Lus10033945.g ID=Lus10033945.BGIv1.0 annot-version=v1.0 MTKHRWKESVKSFFGSHIDPEKDEQLQGSKEEFDDKLKRILELINEEDSEVERSKRKPLVDLIEDFHNQYESLYSRYDHLTGELRKKFYGKKRGSDSSSS SSSDSDSDDDSKDKSGKNGRLERGKLTDGIKKELETASLEVAELKGKVAAATEEKDALYLEYQSALSKIEEAEAIAKSMKVELETINAEKVKILVENEEL TQNLNQAGKTEAELNQRLEDIAKEKEGLTAEKTALLERIEEEEKIKRELRMASDRLADERVVLSKELESLKGEISTLNEKLKSSEVVMSNLTQNSTVAEE EKKSMVTEISVLNQKLEEMKLEKDSLVSEKETATQRILEEEKVTADLRDLADKFQGENSSLKHELETITNQLIDTKKQLESAEQMGSDFSAKLKVAEEEN ASLASRVSQTLDELQSTQNTVQELNTLSSQLEEKLDGKEKEVSSLTQKYEALGVESAIQVTELESQVATVELKLAGMSEQNRELELEVQTKIDEASQLVG ENGKLQSQILELEKISKDREVEISELARKLEENERESSARFVSLTSEVTTLLADLEYMGGQKAELEKQLISNSDETSNQLKVYIDQVNELQQQLQTVHSR KVELEEQLQSRIEANSEILIQMEKLKEEIACKTEDHQKVVADLESMSGQKAELEKQMTSSSEEVANQLKVLMDQVSELQQQLQSVESQKVELEVQLQNRI AETSEYLIQIEKLKEEVVSKAEDHQKVLAEFESLSGLKVELEKQMTSSSEEASNRLKVIMDQVNELQQQLQSVDSQKDELEVQLQHKIAENSEASAQIEK LKEEISGKAEDHQKVLADLESMSGQKAELEKQMTSNSEEASNQLKVFMDQVSELQLQLQSVGSQKVALEVQLQNKTEANSESLIQIEKLKEEVAAKAEDL EKVQMEKDHLTEKIKELILEIETLGNQKNNLEQEVRNHIEEIASLKDEMSTLHDRVSGMDQTISERGLEFSALHEKHTSRETEVSAEITSLKEQANSLQQ ELDSLRNEKNELQTQLEKDQREFSSKLTEMENQKTELATQVADLQKLLDEQAESYKKLSDDYKQIEALYEDSKANAKSAEKNANDLNKQVAELLETIESQ KRDIEFKGEELRSLGDKNNNIEVKLRLSSQKGRVTDQLLSEQEETFRKEEAKYKEKQRELEARISSLSSTLAVTKEAHRKMVTELSDKLHGAITGLDTLS SRFDEDCNRYQHRVMEMSREVQIAKGWVVAMNKKIEKLKKEANSSALQLKHAREQESALKIAVGELQAKASREETEKHNLTKAMAAMEASMKEKDEGIFH LGEEKREAIRQLCILIDYHRVRYDGIIESLLSKVPGRRQRAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10033945 [exp]	0	1
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	5.0	0.8631
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	11.2	0.7826
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	11.7	0.7817
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	14.1	0.8378
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	16.7	0.8264
					Lus10017937 [exp]	18.8	0.8069
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	21.8	0.8071
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	23.7	0.8023
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	26.8	0.8077
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	30.6	0.7289

Compare expression of checked genes

Lus10033945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.