Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 397 / 1e-127 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16610 359 / 2e-115 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 351 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 344 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 348 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 343 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 342 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 338 / 5e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 340 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 338 / 5e-106 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000119 [exp] 389 / 9e-132 AT4G18750 149 / 5e-40 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 392 / 2e-125 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 380 / 4e-121 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009487 [exp] 371 / 3e-118 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 368 / 6e-117 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 350 / 9e-110 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 342 / 1e-106 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 347 / 1e-105 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035619 [exp] 334 / 2e-104 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 398 / 5e-128 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 378 / 5e-121 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G178200 [exp] 374 / 2e-119 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 366 / 2e-116 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G074700 [exp] 362 / 1e-115 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 362 / 6e-115 AT3G22690 582 / 0.0 unknown protein Potri.009G067000 [exp] 357 / 4e-113 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 358 / 1e-112 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 356 / 3e-112 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G161800 [exp] 348 / 2e-110 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033946 pacid=23154808 polypeptide=Lus10033946 locus=Lus10033946.g ID=Lus10033946.BGIv1.0 annot-version=v1.0 ATGAGCTTATGGCGATTGACTAGCAATGTTCAACACCACCCTTCTCTTTTCAAACTTACCCACTTGCTTCAGGTGTGCAGCGATTCCAAATATCTGAAAC AAGGCCAACAAATCCATCAACATGTCATTGTATCCGGGTCTGGTGATAACACGTACATAGTGACTAAAGTGATTCAATTGTACGCGGATTGCGATGATTT GGGTTCGGCACGAAAGCTGTTCGATGTATTTCCACACCCAAATATGTTCGCTTGGACATCCATTCTTGGATTCTTCTCAAGGCACGGGATGTATGAAGAA TGCGTGGAGAATTATGGGTTGATGAAGTTTCGAGGCGTTCCAGTGGATAACTATGTGTTCCCAAAAGTTCTGAAAGCGTGTGCTCAGTTGTCTTGGTTGG ACGGAGGGAGGTGGGTTCATGGAAGTGTAGTTCTTTCTGGCTGCGACTGGAATTTGCAAGTGTGCAATGCTTTAATTGACGTGTATGCGAAATGTGGGGA TGTATCGAGTGGGAGGTTGGTGTTTGAGGAGATGGGGACGACGAGAGATTTGTTGTCGTGGAATTCACTAATTTCCGGTTACGTTTCAAACGGGTTGCTA GAATTAGCTGTGCAGCATTTTGCCACGTTGAGATTACATGGTATTGAGCCTGACATCATTACGTTGAATATGGCGATGGATGCTTACAGTCGGATGGGTC TCTGCGATAAAGCGTCAAAGGTTTTTGAACAGCTATCAAATCCCAACATCATCTCATGGACTACTCTAATGTCTGGTTATTCTAAGGCCGGTAATTATGA TACATGTTTGAGAACTTTCAACGACATGGTGAATGAAGGGACAGTTGTTCCTGATGTAGATTCCCTTTCACTTGTCCTTGTTTCATGCCGCCATCTCTGT GCTTTGATGCATGGAAAGGCAATCCATTGTTATGGAATCAAAACTGGATCTGTGGGAAGATTTTATAGATCAGCTGGGCCGGCTTTGTTGATAATGTATG CTAAATGCGACTCGATTCAATACGCTAAAACTGTGTTTGCAGTGATGGACAAATCCGACATTGTTGCCTGGAACGCAATGATTCTCGCCTTTGCAGAACT GGATTTGAAGGATCTAGCACTTGAATGCTTTATCGAGATGCAGAAAATCGGCATCCGGAATGATCAAACGACCATATCTACTGTTTTACCTCTTTGTGAT TTGAAACATGGGAAACAGATTCATGGATATATAATGAAATGCATTGTAGATAAGAATGTTATAGTTTCAAATGCAGTAATACATATGTACTGTTCTTGTG GTAAAATCGGAACAGCATACTCGGTGTTCTCGAATTTGAAAACCAGAGATTTAGTAACATGGAACACAATGATCAGAGGATTCGGCATGCACGGGCATGG CCAGGCAGCATTGAAGCTTCTACAGGAGATGGACCGGTTAGGAATTAGTCCTGATTCCGTTACGTTCACTTCTGTTCTATCCGGGTGTGACCATTCTGGT CTTGTGGAAGAGGGTTTTAAGCTCTTTGAGAGCATGACAAGAGAATATGGATTCATTCCCAGGATGGAACATTATTCTTGCGTTGTTAACATGCTGGCAC GTGCCGGTAAGTTAGAAGCTGCTACATCGTTCATTGATCAGATGCCATTACAGCCTGATAAGTCTATCTGGGGAGTCTTACTGGCGGCTTGCCTTGAACA ACAAAATGTAGATGTTGGGAAGCTGGCGGCTGAACAGTTGGTCCATCTCGAACCTCGGTGTTCTGGACATTATGTCACTCTGTCTAACTTGTACGCTGAA GCTGGCAATTGGTCTAATGCTATAAGGGTGAGAAAGGAAATGGAAGCTAGAGGGTTGGTTAAGACGTCTGGGCATAGTTGGATAATTTAA
AA sequence Show only first row Show all	>Lus10033946 pacid=23154808 polypeptide=Lus10033946 locus=Lus10033946.g ID=Lus10033946.BGIv1.0 annot-version=v1.0 MSLWRLTSNVQHHPSLFKLTHLLQVCSDSKYLKQGQQIHQHVIVSGSGDNTYIVTKVIQLYADCDDLGSARKLFDVFPHPNMFAWTSILGFFSRHGMYEE CVENYGLMKFRGVPVDNYVFPKVLKACAQLSWLDGGRWVHGSVVLSGCDWNLQVCNALIDVYAKCGDVSSGRLVFEEMGTTRDLLSWNSLISGYVSNGLL ELAVQHFATLRLHGIEPDIITLNMAMDAYSRMGLCDKASKVFEQLSNPNIISWTTLMSGYSKAGNYDTCLRTFNDMVNEGTVVPDVDSLSLVLVSCRHLC ALMHGKAIHCYGIKTGSVGRFYRSAGPALLIMYAKCDSIQYAKTVFAVMDKSDIVAWNAMILAFAELDLKDLALECFIEMQKIGIRNDQTTISTVLPLCD LKHGKQIHGYIMKCIVDKNVIVSNAVIHMYCSCGKIGTAYSVFSNLKTRDLVTWNTMIRGFGMHGHGQAALKLLQEMDRLGISPDSVTFTSVLSGCDHSG LVEEGFKLFESMTREYGFIPRMEHYSCVVNMLARAGKLEAATSFIDQMPLQPDKSIWGVLLAACLEQQNVDVGKLAAEQLVHLEPRCSGHYVTLSNLYAE AGNWSNAIRVRKEMEARGLVKTSGHSWII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10033946 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	19.8	0.7338
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10005285 [exp]	25.7	0.7685
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10034392 [exp]	34.9	0.7176
AT5G64816			unknown protein		Lus10025266 [exp]	42.0	0.7184
AT3G51560			Disease resistance protein (TI...		Lus10009109 [exp]	44.4	0.7157
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	44.6	0.7336
AT3G04130			Tetratricopeptide repeat (TPR)...		Lus10036975 [exp]	45.5	0.6820
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	49.3	0.7484
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	63.7	0.6870
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	92.8	0.7248

Compare expression of checked genes

Lus10033946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.