Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01100 543 / 0 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 182 / 5e-53 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 162 / 8e-47 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G07320 164 / 2e-46 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT3G53940 160 / 1e-45 Mitochondrial substrate carrier family protein (.1) AT1G14560 155 / 3e-44 Mitochondrial substrate carrier family protein (.1) AT2G37890 155 / 5e-44 Mitochondrial substrate carrier family protein (.1) AT4G26180 153 / 2e-43 Mitochondrial substrate carrier family protein (.1) AT5G01500 153 / 8e-43 TAAC thylakoid ATP/ADP carrier (.1) AT3G55640 151 / 8e-43 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033948 [exp] 645 / 0 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 629 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 617 / 0 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032522 [exp] 177 / 2e-51 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 177 / 5e-51 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 171 / 5e-49 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 170 / 1e-48 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 164 / 3e-47 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 159 / 2e-45 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094100 [exp] 593 / 0 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 587 / 0 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 568 / 0 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 556 / 0 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 174 / 3e-51 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 175 / 2e-50 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 167 / 1e-48 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 168 / 1e-47 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 162 / 7e-47 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 162 / 1e-46 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10033947 pacid=23154883 polypeptide=Lus10033947 locus=Lus10033947.g ID=Lus10033947.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAAGATGTGAAGACTAGTGGGGAGGCTGCTGTTTCGACGATCGTCAATCTCGCTACTGAAGAGGCCAAGCTAGCTCGTGAAGGTGTCAAGA CTCAGGGCCCCGCTTTCCTCAGCATCTGCAAATCCCTCGTCGCCGGTGGTGTTGCCGGAGGAGTGTCCCGCACAGCTGTTGCTCCACTAGAAAGACTAAA AATTCTACTCCAGGTCCAAAATCGACACAGTATAAAATACAATGGTACAATTCAGGGGTTGAAATACATTTGGAGAACCGAGGGTTTCAGAGGATTGTTT AAAGGAAATGGCACGAACTGTGCTCGAATTGTACCAAATTCAGCTGTCAAGTTCTTCAGTTACGAGAAAGCCTCTGAGGGTATTCTATGGTTCTATAGGC GCCAAACTGGAAAAGATGATGCACAGCTTACTCCTGTTTTGCGTCTGGGAGCTGGTGCTTGTGCTGGTATAATCGCCATGTCAGCTACTTACCCGATGGA CTTGGTTAGAGGTCGCCTAACTGTCCAGACAGATCAGTCTCCTCGTCAGTACAGAGGTATTGCTCATGCTCTTAGAACTGTCCTGAAGGAAGAAGGGCCT CGTGCATTATACAAGGGCTGGCTTCCTTCCGTCATAGGAGTTGTACCGTATGTGGGTCTCAACTTTGCTGTTTATGAATCCCTAAAAGACTGGTTGCTGA AGTCCAACACATTTAACCTGGTCGAAAACAACGAACTGAGTGTACCGACAAGGCTTGCATGTGGAGCCGCAGCTGGAACTGTTGGCCAGACAGTTGCTTA TCCACTCGATGTTATTCGACGAAGAATGCAAATGGTAGGGTGGAAGGATGCTGCTTCAGTTGTAACCGGGGATGGAAGGGGCAGAGCACCCCTCGAGTAC ACCGGTATGGTTGATGCCTTCAGGAAAACAGTTCGATATGAGGGTTTCGGAGCACTGTACAAGGGTTTAGTCCCCAATTCAGTAAAGGTTGTTCCATCCA TTGCCCTTGCGTTTGTGTCATATGAGATGGTGAAAGATGTACTCGGGGTTGAAATGAGGATCTCTGACTGA
AA sequence Show only first row Show all	>Lus10033947 pacid=23154883 polypeptide=Lus10033947 locus=Lus10033947.g ID=Lus10033947.BGIv1.0 annot-version=v1.0 MASEDVKTSGEAAVSTIVNLATEEAKLAREGVKTQGPAFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHSIKYNGTIQGLKYIWRTEGFRGLF KGNGTNCARIVPNSAVKFFSYEKASEGILWFYRRQTGKDDAQLTPVLRLGAGACAGIIAMSATYPMDLVRGRLTVQTDQSPRQYRGIAHALRTVLKEEGP RALYKGWLPSVIGVVPYVGLNFAVYESLKDWLLKSNTFNLVENNELSVPTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGRAPLEY TGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVSYEMVKDVLGVEMRISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	0	1
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	2.6	0.7776
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	12.6	0.7187
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10035425 [exp]	15.1	0.6235
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	16.0	0.7163
AT1G07210			Ribosomal protein S18 (.1)		Lus10038756 [exp]	21.8	0.7410
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	27.1	0.6825
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	27.3	0.6688
AT4G16270			Peroxidase superfamily protein...		Lus10037786 [exp]	39.0	0.7094
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	45.7	0.6647
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	121.4	0.6068

Compare expression of checked genes

Lus10033947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.