Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01100 545 / 0 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 177 / 6e-51 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G53940 162 / 1e-46 Mitochondrial substrate carrier family protein (.1) AT5G07320 164 / 4e-46 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 159 / 8e-46 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G26180 154 / 8e-44 Mitochondrial substrate carrier family protein (.1) AT3G55640 154 / 9e-44 Mitochondrial substrate carrier family protein (.1) AT5G01500 155 / 1e-43 TAAC thylakoid ATP/ADP carrier (.1) AT2G37890 152 / 5e-43 Mitochondrial substrate carrier family protein (.1) AT1G14560 150 / 2e-42 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032365 [exp] 644 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 644 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 600 / 0 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032522 [exp] 173 / 4e-50 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 174 / 1e-49 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 167 / 1e-48 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 167 / 1e-47 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 166 / 4e-47 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 159 / 2e-45 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094100 [exp] 596 / 0 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 589 / 0 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 574 / 0 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 562 / 0 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 172 / 9e-51 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 173 / 1e-49 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 167 / 1e-48 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 164 / 2e-47 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 163 / 3e-47 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 164 / 5e-46 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10033948 pacid=23154680 polypeptide=Lus10033948 locus=Lus10033948.g ID=Lus10033948.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGGATGTGAAGACGAGTGGGGAGGCTGCTGTTTCGACGATCGTCAATCTCGCTACTGAGGAGGCCAAGCTGGCTCGTGAAGGTGTCAAGA CTCAGGGCCCCGCTTTCCTTAGCATCTGCAAATCCCTCGTCGCCGGTGGTGTGGCCGGAGGAGTGTCCCGCACAGCTGTTGCTCCACTAGAAAGATTAAA AATTCTACTCCAGGTCCAAAATCCACACAGTATAAAATACAATGGTACAATTCAGGGCCTGAAGTACATTTGGAGAACTGAGGGTTTCAGAGGATTGTTT AAAGGAAATGGCACCAACTGCGCTCGGATTGTACCAAATTCAGCAGTCAAGTTCTTTAGTTACGAGGAAGCCTCTAAGGGTATTTTATGGTTATACAGGC GCCAAACTGGAAAAGATGATGCACAGCTTACTCCTGTTTTACGTCTTGGTGCTGGTGCTTGTGCTGGTATAATTGCTATGTCCGCAACTTATCCGATGGA CATGGTTAGAGGTCGCTTAACTGTCCAGACAGACAAGTCTCCTCGTCGGTACAGAGGTATAGCCCACGCCCTTAGGACTGTCCTAAAGGAAGAAGGGGGC CGTGCATTGTACAAAGGCTGGCTTCCTTCTGTCATAGGAGTTGTACCGTATGTGGGTCTCAACTTTGCTGTTTATGAATCCCTAAAAGACTGGTTGCTGA AGTCCAACACATTTAACCTGGTCGAAAACAACGAACTGAGTGTACCGACAAGGCTTGCATGTGGAGCCGCGGCTGGAACTGTTGGCCAGACAGTTGCTTA TCCACTCGATGTTATTCGACGAAGAATGCAAATGGTAGGGTGGAAGGATGCTGCTTCAGTTGTAACTGGGGATGGAAGGGGCAGAGCTCCCCTCGAGTAC ACCGGTATGGTTGATGCCTTTAGGAAAACAGTTCGATATGAGGGTTTCGGAGCATTATACAAGGGTTTAGTCCCCAATTCAGTAAAGGTTGTTCCATCCA TTGCCATTGCATTCGTGACATACGAGATGGTGAAAGATGTACTCGGGGTCGAAATGAGGATATCCGACTAG
AA sequence Show only first row Show all	>Lus10033948 pacid=23154680 polypeptide=Lus10033948 locus=Lus10033948.g ID=Lus10033948.BGIv1.0 annot-version=v1.0 MASEDVKTSGEAAVSTIVNLATEEAKLAREGVKTQGPAFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLF KGNGTNCARIVPNSAVKFFSYEEASKGILWLYRRQTGKDDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTDKSPRRYRGIAHALRTVLKEEGG RALYKGWLPSVIGVVPYVGLNFAVYESLKDWLLKSNTFNLVENNELSVPTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGRAPLEY TGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVEMRISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033948 [exp]	0	1
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	9.4	0.6994
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	10.1	0.6721
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	31.2	0.6692
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	53.0	0.6311
AT3G26950			unknown protein		Lus10032012 [exp]	55.4	0.6401
AT1G36730			Translation initiation factor ...		Lus10002283 [exp]	75.0	0.5890
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	81.2	0.5585
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	101.2	0.6055
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	105.1	0.5922
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	131.6	0.5883

Compare expression of checked genes

Lus10033948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.