Plant FIBer expression Database

Lus10033949 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61660 50 / 1e-08 unknown protein
AT2G46375 40 / 9e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032366
[exp]
140 / 5e-44 AT3G61660 61 / 1e-12 unknown protein
Lus10005152
[exp]
45 / 1e-06 AT3G61660 58 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G137600
[exp]
61 / 5e-13 AT3G61660 57 / 1e-11 unknown protein
Potri.001G094000
[exp]
61 / 5e-13 AT3G61660 55 / 1e-10 unknown protein
Potri.014G095600
[exp]
51 / 8e-09 AT3G61660 65 / 5e-14 unknown protein
Potri.002G168300
[exp]
51 / 8e-09 AT3G61660 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10033949 pacid=23154641 polypeptide=Lus10033949 locus=Lus10033949.g ID=Lus10033949.BGIv1.0 annot-version=v1.0
ATGGAGAAGAATGGCAGTGGAGATCATCAAGTGGCGGCGGTGTGGGATTGCGGGAGCCCGTTGTACGATTCCTACGAGATTGCTTCACTCGGCCACCTCA
TCGATCGACACTCCATGTCCCTACCTTCCTCACCGTCGTCGTTGCCCTCTGGCGCCGCCCCTGCCCCTGCTGTCGACTCGAAACAGAGGCGGAGTGGTTT
CGGAGGGGAGAAGAAGATGGGTTTGGGTTCGTTGTCGATATTAGTAAGGAGGTGGAATAGTATCATCATTATTATAAGTAGCAGAAAGAGTGAGATCAGT
AATTGCTGTAAGAAGGGTGCTACTAAGCAATCTGCAGCGGGGATACGTTGGATGAGTTGCTTCTGCAAAGGCAAAGTTGCTGATGTTAACGAAATATTGT
AA
AA sequence
>Lus10033949 pacid=23154641 polypeptide=Lus10033949 locus=Lus10033949.g ID=Lus10033949.BGIv1.0 annot-version=v1.0
MEKNGSGDHQVAAVWDCGSPLYDSYEIASLGHLIDRHSMSLPSSPSSLPSGAAPAPAVDSKQRRSGFGGEKKMGLGSLSILVRRWNSIIIIISSRKSEIS
NCCKKGATKQSAAGIRWMSCFCKGKVADVNEIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61660 unknown protein Lus10033949
[exp]
0 1
AT5G08100 ASPGA1 asparaginase A1, N-terminal nu... Lus10017879
[exp]
2.2 0.9542
AT1G60790 TBL2 TRICHOME BIREFRINGENCE-LIKE 2,... Lus10030590
[exp]
8.1 0.9314
Lus10010608
[exp]
9.5 0.9216
AT4G23430 AtTic32-IVa translocon at the inner envelo... Lus10024685
[exp]
9.8 0.9317
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10036603
[exp]
11.5 0.9340
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Lus10039640
[exp]
13.2 0.8918
AT1G70840 MLP31 MLP-like protein 31 (.1) Lus10020497
[exp]
17.3 0.9328
AT4G39150 DNAJ heat shock N-terminal dom... Lus10017980
[exp]
22.2 0.9238
AT2G02850 ARPN plantacyanin (.1) Lus10022800
[exp]
23.9 0.9317
AT2G47460 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSI... Lus10001458
[exp]
25.7 0.9088

Lus10033949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.