Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11090 519 / 0 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 494 / 2e-173 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT4G01080 410 / 4e-140 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT1G01430 407 / 1e-138 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15890 315 / 8e-102 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT5G15900 299 / 3e-97 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT1G70230 290 / 7e-94 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT3G28150 259 / 6e-82 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G51640 244 / 4e-75 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 238 / 2e-72 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032367 [exp] 870 / 0 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10029454 [exp] 444 / 1e-153 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 436 / 2e-151 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 308 / 2e-100 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 297 / 2e-96 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029188 [exp] 287 / 6e-92 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10010704 [exp] 284 / 7e-91 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10024167 [exp] 275 / 7e-88 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10039438 [exp] 256 / 1e-80 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137800 [exp] 616 / 0 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 610 / 0 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.014G095800 [exp] 516 / 0 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 514 / 0 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 321 / 2e-105 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.008G146100 [exp] 295 / 2e-95 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 295 / 2e-95 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.004G105500 [exp] 285 / 9e-92 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 283 / 6e-91 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 282 / 8e-91 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10033950 pacid=23154840 polypeptide=Lus10033950 locus=Lus10033950.g ID=Lus10033950.BGIv1.0 annot-version=v1.0 ATGAAGCGGATTCTGAACCTCTGGTCGCTGAACAAGCAGAACCAGTGGATATTGAAGTTGGGAGTCTCGGTCCTCGTAGTGGGTCTCGCTTTCCACCTCC TCTTCAATCAGTCCTCCAGATTCGAACCTCAATTGGAAGATGTAGCTTCTTCCTACATTGCCGCCGGTAGAGCTGATGTGTTGATCTCCCCATCTGCTTC TGCTGCTGCTTCAGCTGAAACGTCGTCCCATCCACCGCCGGATTTTGTTTCCGATGATATCCCAATCTCACCTCCTGCTCCCCAGCCTTCTCCTTCTTCT TCTGCTGCTGCTTCTACTGAGGGCTCCAATTCAACTATAGCTGTAGATGGACGACCGGATCCGGATGAAAATGAGGCGCCGGATGATGGAAAATGCAATC TGGTTGTTGGTGATTGGATTCCTGAACCATCTGGTCCAATGTACACGAATGCTACATGCAAATTCATTGATGGCCACCAGAACTGTATGATGAATGGACG CCCTGATTCTGGTTATATGTACTGGAGGTGGAAACCCCGGCGATGTGACTTGCCTGCATTCGATGCACTGCGATTTCTGCACTTGATGAGGGACAAATCG TGGGGGTTGATTGGCGATTCCATTTCACGCAACCATGTCGAGTCGCTGCTGTGCATGCTTTCTACGGTCGAACAACCTGTGGAAGTTTACCACGACGAGG AATACAGATCCAAAAGATGGCACTTCCCTACTTACAACTTCACCGTATCAAACCTTTGGTCCCCATTCCTGGTACAGGCAGCCATCTTCGAAGACTACAA TGGAGTCTCAACATCCGAGGTCCAGTTACAGCTCGACAAACTCGACAAGAGCTGGGTAGATGTTTACCAGAGCTTGAACTACATTATAATCTCAACTGGG AAATGGTTCCTGAAGGCCGCCGTATACCACGAAAACAACACAATTGTCGGCTGCCACATCTGCCCTCAAGGAAAGAACCTGACAGAGACCGGGTTCGACT TTGCGTATGAAAAAGCCCTGAGCTTCGCTCTGAACTCCATCGTGGGATCGAAGCACAAGGGACAAATCTTCTTCAGGACATCCACACCGGATCATTTCCA GAGCGGCGAGTGGCACAATGGAGGGAACTGTCTGCAGACAGGACCGGCTAAAGAAGGCGAATTCGCTATGAAGGAGGTCAACAAGATCTTAAGACAAGTG GAGCTGGCTGAGTTTGATAAGGCAGCCACGAAAGCAGCTGAATTTGGGGTGAACCTGAAACTGATTGATTTCACCAACCTGCTGTTGCCAAGGCCTGACG GGCACCCCGGTGCTTACAGACAGTTTCAGCCGTTTGCGGAAGACAAGAACGCTACTGTTCAGAATGACTGCCTGCATTGGTGCTTGCCCGGTCCGATTGA TTACTTGAACGACGTGATCATGGAGATGGTGGTGAATGGTTGA
AA sequence Show only first row Show all	>Lus10033950 pacid=23154840 polypeptide=Lus10033950 locus=Lus10033950.g ID=Lus10033950.BGIv1.0 annot-version=v1.0 MKRILNLWSLNKQNQWILKLGVSVLVVGLAFHLLFNQSSRFEPQLEDVASSYIAAGRADVLISPSASAAASAETSSHPPPDFVSDDIPISPPAPQPSPSS SAAASTEGSNSTIAVDGRPDPDENEAPDDGKCNLVVGDWIPEPSGPMYTNATCKFIDGHQNCMMNGRPDSGYMYWRWKPRRCDLPAFDALRFLHLMRDKS WGLIGDSISRNHVESLLCMLSTVEQPVEVYHDEEYRSKRWHFPTYNFTVSNLWSPFLVQAAIFEDYNGVSTSEVQLQLDKLDKSWVDVYQSLNYIIISTG KWFLKAAVYHENNTIVGCHICPQGKNLTETGFDFAYEKALSFALNSIVGSKHKGQIFFRTSTPDHFQSGEWHNGGNCLQTGPAKEGEFAMKEVNKILRQV ELAEFDKAATKAAEFGVNLKLIDFTNLLLPRPDGHPGAYRQFQPFAEDKNATVQNDCLHWCLPGPIDYLNDVIMEMVVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	0	1
AT4G35320			unknown protein		Lus10026561 [exp]	1.0	0.9303
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	2.4	0.9218
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	2.4	0.9164
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	4.5	0.9096
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	5.3	0.9103
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	5.7	0.8921
AT5G58520			Protein kinase superfamily pro...		Lus10031864 [exp]	7.6	0.8738
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	7.7	0.8941
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	8.5	0.9074
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	11.0	0.8901

Compare expression of checked genes

Lus10033950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.