Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 164 / 5e-46 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 155 / 1e-42 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G35570 46 / 4e-06 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT1G20693 46 / 6e-06 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 46 / 6e-06 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT1G20696 43 / 8e-05 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G04880 43 / 0.0003 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT5G23420 42 / 0.0004 HMGB6 high-mobility group box 6 (.1.2) AT3G51880 40 / 0.0008 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023091 [exp] 263 / 1e-86 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 226 / 6e-69 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023090 [exp] 213 / 1e-66 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10033954 [exp] 197 / 2e-58 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 181 / 1e-51 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 176 / 9e-50 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10040574 [exp] 50 / 1e-07 AT4G23800 71 / 8e-16 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10040192 [exp] 51 / 2e-07 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 51 / 4e-07 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138000 [exp] 177 / 2e-50 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 170 / 7e-48 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G101400 [exp] 48 / 1e-06 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 48 / 1e-06 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 47 / 5e-06 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.002G009000 [exp] 45 / 1e-05 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 43 / 0.0001 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 43 / 0.0001 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10033951 pacid=23154715 polypeptide=Lus10033951 locus=Lus10033951.g ID=Lus10033951.BGIv1.0 annot-version=v1.0 ATGGCGGAAGTCGCTGATGTTCCCGCGAAGAGAGGTAGGAAGAACACCAAGAAAGTTCTGGATCAGAAGAAATCCACTACCAACGAGGCCAACATCTTGG CTCAGACGCTCGCAGCCGACTCCTCGCCCTCCGTGGTTCCTCCGCCGTCGTCGTCGGATGCCGATTCTATGAAGGAGAATCGTGATAGCATCTCCTCGTC CAAGAAGGGGAAGGCGGTCAAAGGCGGCAAACAGAAGCCGTCGTTTGAGAAGGAGATGGAAGAGATGCAGGAAATGCTTCAGCAGCTGAAGCTGGAGAAA GAGAAGACGGAGGAGATGTTGAAGGAGAAGGACGAGATGCTGAAGGCAAGGGAGGACGAGCTCGAGAACAAGGGGAAAGAGCAGGAGAAGCTGCAGTCGG AGCTCAAGAAGTTACAGAAGCTCAAGGAGTTCAAACCTACACTCCATTTTCAGATATTGAAAGATAACGAGCCAGACGACAAGAGTAGGAATAAGAAGAA GAAAAAGAAGGACGGGACTGAAATGAAAAGGCCATCAACGCCTTACATCCTCTGGAGCAAAGATCAGTGGGCTGAGATCAAGAAGGCGAACCCAAATGCT GATTTTAAAGAGACCTCCAACATTTTGGGAGCCAAGTGGAAGACTGTAACTGCAGAAGAGAAGAAGCCATACGAGGAGAAGTATCGTGCTGAGAAGGAAG CTTATTTGAAGCTTGCTGGTGAGGAATGGAAAACCATGACAGAGAAGCAGAAAGCACCATATGAAGAGATGGCAAAGAAGAACAAGGAGAAATACTTGAT TGAGATGGAGGCTTATAAGCAGAAAAAGGAGGAAGAAGTCATGAATGTGAAGAAGGAAGAGGAAGAAGTGCTGAAGCTTCAAAAGCAGGAAGCAATGCAA CTGCTAAGGAAGAAGGAGAAAACAGACAACATAATCCAGAAAACAAAAGAGGAAATGCAGAAGAAAAAGAAGAGCAAGAATATTGCTGCAGATCCTAACA AGCCAAAGAAGCCTGCAACCTCTTTTCTCTTGTTCAGCAAGGAAGAAAGGAAAAAATTAATGCTGCAGCAGCGGCCGGGAAGCAACAACTCTACCCTGAC TGCACAAATCTCTGTTAAGTGGAAGGAATTGAATGAAGAGGAGAGGAAGATATGGAATGCAAAAGCTGCGGAAGGCATGGAGGTTTACAAGAAGCAAATG GAAGAGTACAACGAGACACGCGGCTCCCAAAATCCACACTAG
AA sequence Show only first row Show all	>Lus10033951 pacid=23154715 polypeptide=Lus10033951 locus=Lus10033951.g ID=Lus10033951.BGIv1.0 annot-version=v1.0 MAEVADVPAKRGRKNTKKVLDQKKSTTNEANILAQTLAADSSPSVVPPPSSSDADSMKENRDSISSSKKGKAVKGGKQKPSFEKEMEEMQEMLQQLKLEK EKTEEMLKEKDEMLKAREDELENKGKEQEKLQSELKKLQKLKEFKPTLHFQILKDNEPDDKSRNKKKKKKDGTEMKRPSTPYILWSKDQWAEIKKANPNA DFKETSNILGAKWKTVTAEEKKPYEEKYRAEKEAYLKLAGEEWKTMTEKQKAPYEEMAKKNKEKYLIEMEAYKQKKEEEVMNVKKEEEEVLKLQKQEAMQ LLRKKEKTDNIIQKTKEEMQKKKKSKNIAADPNKPKKPATSFLLFSKEERKKLMLQQRPGSNNSTLTAQISVKWKELNEEERKIWNAKAAEGMEVYKKQM EEYNETRGSQNPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	2.6	0.9548
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	3.5	0.9404
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10035183 [exp]	4.0	0.9164
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	4.0	0.9505
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	7.7	0.9389
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	8.3	0.9489
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	8.7	0.9112
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	9.5	0.9217
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	10.7	0.9337
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	11.0	0.9198

Compare expression of checked genes

Lus10033951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.