Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 211 / 3e-63 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 209 / 2e-62 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT1G69020 86 / 1e-17 Prolyl oligopeptidase family protein (.1) AT4G35570 64 / 2e-12 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT1G20696 64 / 4e-12 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT3G51880 63 / 1e-11 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 61 / 6e-11 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 60 / 6e-11 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT1G50380 51 / 1e-06 Prolyl oligopeptidase family protein (.1) AT2G34450 48 / 2e-06 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032379 [exp] 356 / 1e-118 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023091 [exp] 305 / 4e-102 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 262 / 3e-82 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 257 / 3e-80 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033951 [exp] 179 / 2e-51 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10026683 [exp] 117 / 9e-28 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 97 / 5e-14 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10030738 [exp] 64 / 2e-11 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 61 / 4e-11 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138000 [exp] 261 / 1e-81 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 230 / 6e-70 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.010G137801 [exp] 81 / 5e-16 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G101400 [exp] 66 / 5e-13 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 62 / 6e-11 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 61 / 8e-11 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 59 / 3e-10 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 57 / 2e-09 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G035900 [exp] 56 / 3e-08 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 51 / 2e-06 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10033954 pacid=23154669 polypeptide=Lus10033954 locus=Lus10033954.g ID=Lus10033954.BGIv1.0 annot-version=v1.0 ATGGAGAAGCGTGAGACTGAAGCCATGAGACTTTTGGAAGAGGAGCAGAAGCAAAAGACAGCCATGGAGTTGCTTGAACAGTATGTGCAGTTCATGAATG AAGCTGATGATCAAGGGACCAAGAAGACTAAGAAAGAGAGAGATCCATTGAAGCCAAAGCAACCAACGTCAGCTTTTTTCATCTTCTCTAATGAGAGAAG GGCTGCCCTGGTTGCTGAGACAGAGAACAAGACTGAGAACAAGAGTGTTACTGAGTTTGCGAAGCTTGCTGGTGAGGAATGGAAAACCATGACAGAGAAG CAGAAAGCACCATATGAAGAGATGGCAAAGAAGAACAAGGAGAAATACTTGATTGAGATGGAGGCTTATAAGCTGAAAAAGGAGGAAGAAGCTATGACTG TGAAAAAGGAGGAGGAAGAAGTGTTGAAGCTTCAAAGGCAGGAAGCAATGCAACTGCTAAAGAAGAAGGAGAAAACAGACAACATAATCAAGAAAACAAA AGAGGAAATGCAGAAGAAAAAGAAGAGCAAGAATGCTGCAGATACTAAGCAGCCAAAGAAGCCTGCAACCTCTTTTCTCTTGTTCAGCAAAGAAGAAAGG AAAAGGTTGATGCAGGAGCGGCCGCCGGGAAGCAACAACTCCACACTGACTGCAGAAATCTCTGTCAAGTGGAAGGAATTGAATGAAGAGGAGAGGAAGA TATGGAATGCAAAAGCTGCAGAAGGCATGGAGGGTTTACAAGAAGAAAATGGAAGAGTACAACAACAAGTCATGTGGCTCCGAGAATCAACACTAGGTTC AAACCTCCAGCTGCCACCGGCTTCTTACTACCCAAATCCACCACACATTCCCATTCTGCCGGAAAGACCCACCACCGCGGCGAAGAAAGTCCCCTCCGCC GTCACCGCACATGGCCAAACCTGCCAGGACCCTTATCAATGGATGCGGAACACATCCGACCAGGACTTCCTCGACTACATCCGCCGGGAGAACTCCTACG CCGATGATATCATGCCGGAGGCCGACCAGTTGCGGCGGACTCTCGTCAGAGAAATGCTGAGTCGGATTCCGGAGAAGATAAAAGGGTATGTTCACAGCAA GAAACTTGCTGCAGAAGGCGCAAGTGCAGGAGGGCTCCTTGTTGCAGCTGCAATCAATATGAAGACTGATCTTTTTCGTGCCGCAATCTTGAAGGTTCCA TTTCTGGATGTCTACAACTCAGTGATGGATCCGAGCTTGCCTCTAACAGAATTCAGCTACGAAGAGTACAGGAACCCACAGACCTTACGAAAACATCCAG CGCGGAACGTGCCAGCCAGCAATGCTCGTCACAACGTCATACAACGACTCTAG
AA sequence Show only first row Show all	>Lus10033954 pacid=23154669 polypeptide=Lus10033954 locus=Lus10033954.g ID=Lus10033954.BGIv1.0 annot-version=v1.0 MEKRETEAMRLLEEEQKQKTAMELLEQYVQFMNEADDQGTKKTKKERDPLKPKQPTSAFFIFSNERRAALVAETENKTENKSVTEFAKLAGEEWKTMTEK QKAPYEEMAKKNKEKYLIEMEAYKLKKEEEAMTVKKEEEEVLKLQRQEAMQLLKKKEKTDNIIKKTKEEMQKKKKSKNAADTKQPKKPATSFLLFSKEER KRLMQERPPGSNNSTLTAEISVKWKELNEEERKIWNAKAAEGMEGLQEENGRVQQQVMWLRESTLGSNLQLPPASYYPNPPHIPILPERPTTAAKKVPSA VTAHGQTCQDPYQWMRNTSDQDFLDYIRRENSYADDIMPEADQLRRTLVREMLSRIPEKIKGYVHSKKLAAEGASAGGLLVAAAINMKTDLFRAAILKVP FLDVYNSVMDPSLPLTEFSYEEYRNPQTLRKHPARNVPASNARHNVIQRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	0	1
					Lus10007413 [exp]	1.7	0.7861
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	2.0	0.7067
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	2.0	0.7359
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	5.5	0.6934
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	8.2	0.6666
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	12.0	0.6831
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	12.1	0.6866
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	13.4	0.6661
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	14.0	0.7337
AT2G28105			unknown protein		Lus10016142 [exp]	14.7	0.6574

Compare expression of checked genes

Lus10033954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.