Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07430 136 / 1e-36 HAI2 highly ABA-induced PP2C gene 2 (.1) AT3G11410 129 / 3e-34 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT2G29380 127 / 1e-33 HAI3 highly ABA-induced PP2C gene 3 (.1) AT4G26080 126 / 6e-33 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G59220 121 / 3e-31 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G57050 112 / 7e-28 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT5G51760 107 / 3e-26 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G17550 104 / 1e-24 HAB2 homology to ABI2 (.1) AT1G72770 103 / 1e-24 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G67820 74 / 2e-14 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032378 [exp] 419 / 7e-141 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10003887 [exp] 216 / 4e-67 AT2G29380 144 / 1e-39 highly ABA-induced PP2C gene 3 (.1) Lus10001832 [exp] 135 / 3e-36 AT2G29380 108 / 7e-26 highly ABA-induced PP2C gene 3 (.1) Lus10016493 [exp] 133 / 2e-35 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040738 [exp] 130 / 3e-34 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10040270 [exp] 122 / 1e-31 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10004703 [exp] 121 / 4e-31 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10012962 [exp] 120 / 4e-31 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10019017 [exp] 109 / 5e-27 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092100 [exp] 194 / 5e-59 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.015G018800 [exp] 147 / 2e-41 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 138 / 1e-37 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.008G059200 [exp] 136 / 6e-37 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 130 / 6e-35 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.001G245200 [exp] 119 / 4e-30 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.009G037300 [exp] 118 / 6e-30 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 111 / 1e-27 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 110 / 3e-27 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.006G164632 [exp] 102 / 2e-24 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10033955 pacid=23154895 polypeptide=Lus10033955 locus=Lus10033955.g ID=Lus10033955.BGIv1.0 annot-version=v1.0 ATGGTTTCTTCACCGTCGTATATCAACAAAATCAAGCGGATCATTCAATCGTCTGAAGAAGAAGAAGACAGCGACAACCGGTCCACCACCGGCGCTGCGG AATCAGGAGAGTCGTCGTCGTCGAGCCGCTGCAGGAGCGTCTCTCACGGACTGGTCTCCGTGATCGGACGGAAGAGGGCGATGGAGGACGCGGTGGCGGC GGTTCCGGGGCTGGAAGTAGGCGGATTAGACAACTACTTTGATTTCTTCGCTGTGTACGAAGGCAGGGGATTCGGATCCGCCGTGTCGGCGTCGTGCAGG AAGCGGATGCATCTGCTGGTTGCTATGGAGGCGGAAAAGAAGAGGATCGGGGGGAAGGGAACTGATCAGGTGATGATGTGGAAGGAATTGATGGCCAATA GCTTTCTGGAAATGGACAGGGAGATCCGTTCGGTTGATCACCAGCAGCTGGAGTACGACGCCGCCGGCTATGACGAGTATGAGGAGGACGCAGAGGTCGA GAAGTCCACGGCGGGGGGGGGGGGGGGGGGGGGGGGGGAGATCGTCGTAGCCAATTCCGGCGATTGTAAAGCCGTTTTATCCCGCGGAGGCGCCTCCCTG CCTTTATCCGCCGGAAACAGACCTGACTCGCCGGAGGAGCATCGTATCGCCGGAGGACAAGTTGCTATTACTGCTTCAAATGCAACAGGAGACGATTCTG ACGTTCGTCGTGTGATATCGGAGCCAGAGGTGACGGTGACGGAGCGGAGTGAATCGGACGAGTTCATAGTAATAGCGTCGGAAGGAATGTGGGATGTGGT CCCCAACAACGCTGCATGTGCTGCAGCCGCCAAGTGTTTCGACAGCGGGAGGAGGATGGGGTTCGCCGACGACACCAGCGAGAATTGCGCGGCGGGGACG GCGGCTTTCCTGGCTGAGCTGGCGATTGCTCGAGGGAGCCGGGAGAATATCAGTGTCATTGTTGTGAAATTGTAA
AA sequence Show only first row Show all	>Lus10033955 pacid=23154895 polypeptide=Lus10033955 locus=Lus10033955.g ID=Lus10033955.BGIv1.0 annot-version=v1.0 MVSSPSYINKIKRIIQSSEEEEDSDNRSTTGAAESGESSSSSRCRSVSHGLVSVIGRKRAMEDAVAAVPGLEVGGLDNYFDFFAVYEGRGFGSAVSASCR KRMHLLVAMEAEKKRIGGKGTDQVMMWKELMANSFLEMDREIRSVDHQQLEYDAAGYDEYEEDAEVEKSTAGGGGGGGGEIVVANSGDCKAVLSRGGASL PLSAGNRPDSPEEHRIAGGQVAITASNATGDDSDVRRVISEPEVTVTERSESDEFIVIASEGMWDVVPNNAACAAAAKCFDSGRRMGFADDTSENCAAGT AAFLAELAIARGSRENISVIVVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	0	1
					Lus10014739 [exp]	2.8	0.9512
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	4.9	0.9364
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10015633 [exp]	5.7	0.9188
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	6.0	0.9486
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10017376 [exp]	7.9	0.9261
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	13.0	0.9231
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10015704 [exp]	15.6	0.8564
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	17.1	0.9333
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	18.2	0.9441
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	18.2	0.9436

Compare expression of checked genes

Lus10033955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.