Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64390 789 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 758 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 593 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 509 / 8e-176 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44560 485 / 1e-168 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44550 480 / 2e-166 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 478 / 6e-166 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44570 473 / 6e-164 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT1G70710 462 / 1e-159 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 450 / 1e-154 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032377 [exp] 916 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 849 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 843 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10035316 [exp] 569 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 553 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10010201 [exp] 529 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 492 / 9e-170 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10008208 [exp] 466 / 7e-161 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 447 / 1e-153 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092200 [exp] 825 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 815 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 592 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 578 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 521 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.010G109200 [exp] 462 / 3e-159 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 456 / 7e-157 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.014G126900 [exp] 441 / 6e-151 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 441 / 7e-151 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 438 / 4e-150 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10033957 pacid=23154824 polypeptide=Lus10033957 locus=Lus10033957.g ID=Lus10033957.BGIv1.0 annot-version=v1.0 ATGTCGGTGGCTCCCCTGCTTTTTCTTTCCTTGCTCTGTTCTTTCACCTCTGTTTTCGCCGGCCATGACTACGGTCAGGCTCTCAGCAAGAGCATTCTCT TCTTCGAAGCTCAGCGCTCCGGCTTTCTCCCTCATAACCAGCGTATCAGTTGGAGATCTAACTCCGGTCTCAATGACGGCAAAGCCAGTGGGGTGGATCT GGTCGGAGGATACTATGACGCCGGCGACAATGTGAAGTTTGGGCTTCCGATGGCGTTCACCGTCACGATGATGTCGTGGAGCATTATTGAGTACGGGAAG CAGATGGCATCCAGCGGCGAGCTACGAAACGCCATGGAAGCTGTCAAGTGGGGGACTGATTACTTCATCAAGGCTCACCCTGAGCCTAATGTTCTTTACG GAGAGGTGGGAGATGGAACGACTGATCACTACTGCTGGCAAAGGCCGGAGGATATGACCACCGACCGCCGTGCATACCGTATTGACCCGAGTAACCCCGG GTCGGATCTCGCCGGTGAGACCGCCGCCGCCATGGCTGCTGCATCCATTGTTTTCCGCCGCTCTAACCCTGCCTACTCCCGCGAGCTTCTCAACCACGCA TATCAGCTGTTTGATTTTGCAAACAAGTACAGAGGCAAATACGACAGCAGTATCACTGTTGCTCAGAAATACTACCGCTCTGTCAGTGGCTACAATGATG AGTTGCTGTGGGCAGCAGCGTGGATGTACCAAGCATCCAACAACCAGTACTACTTGAGCTACTTGGCTGAAAATGGCGAGTCAATGGGTGGAACCGGATG GGGAATGACCGAGTTCGGTTGGGATGTTAAATATGCTGGTGTTCAGACCCTTGTCTCCAAGTTCTTGATGCAAGGAAAAGCTGGCAAATATGCTCCGGTG TTCGAGAAGTACCAGCAGAAGGCTGAGTACTACATGTGTTCTTGCTTGGGAAAGGGAAGCAGAAACATTCAGAAGACACCAGGTGGCTTGATTTTCAGGC AGAGATGGAACAATATGCAGTTCGTCACCAGTGCTTCCTTCCTCGCAACCGTCTACTCCGATTACTTGTCCTCTTCTCGCAAGAGCTTGCATTGCTCTGC AGGCACTGCCTCCCCATCTGATCTCCTTGGATTCGCCAAGTCTCAGGTGGATTACATTTTGGGTGATAATCCTAGGGCAACTAGTTACATGGTTGGATAC GGGAACAACTACCCACAACAAGTTCACCACAGGGCATCCTCCATTGTCTCCTACAAGAAGGACCCTAGGCCTATCAGCTGCCGTGGTGGTTACGCTACCT GGTTCAGCAGCAAATCTAGTGACCCCAATCAGCTTACTGGTGCAATCGTTGGTGGTCCCGATGCTTACGACAATTTTGCTGACGAGAGAGATAACTACTT CATCTCTTTTTTGCCCCGATGTTTCGAGGACTCGTTGCTTAGATACGATCAAATGTGTTTGACTCTTTTTGTTATGCAGAAGTTGTACCAGCTCCTAGCC AGGAGAGGAAAGCTCCAGTGA
AA sequence Show only first row Show all	>Lus10033957 pacid=23154824 polypeptide=Lus10033957 locus=Lus10033957.g ID=Lus10033957.BGIv1.0 annot-version=v1.0 MSVAPLLFLSLLCSFTSVFAGHDYGQALSKSILFFEAQRSGFLPHNQRISWRSNSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGK QMASSGELRNAMEAVKWGTDYFIKAHPEPNVLYGEVGDGTTDHYCWQRPEDMTTDRRAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRELLNHA YQLFDFANKYRGKYDSSITVAQKYYRSVSGYNDELLWAAAWMYQASNNQYYLSYLAENGESMGGTGWGMTEFGWDVKYAGVQTLVSKFLMQGKAGKYAPV FEKYQQKAEYYMCSCLGKGSRNIQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLSSSRKSLHCSAGTASPSDLLGFAKSQVDYILGDNPRATSYMVGY GNNYPQQVHHRASSIVSYKKDPRPISCRGGYATWFSSKSSDPNQLTGAIVGGPDAYDNFADERDNYFISFLPRCFEDSLLRYDQMCLTLFVMQKLYQLLA RRGKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	1.0	0.9088
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	1.7	0.8680
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	2.4	0.8683
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	4.2	0.8341
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10035316 [exp]	4.5	0.8314
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10040598 [exp]	6.2	0.7679
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	6.7	0.8204
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	7.7	0.8259
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	8.2	0.8130
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	8.5	0.8324

Compare expression of checked genes

Lus10033957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.