Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64385 153 / 5e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032376 [exp] 500 / 3e-177 AT1G64385 124 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092300 [exp] 212 / 3e-65 AT1G64385 162 / 2e-46 unknown protein Potri.003G139400 [exp] 184 / 1e-54 AT1G64385 189 / 5e-57 unknown protein Potri.006G108400 [exp] 66 / 1e-11 AT3G51580 166 / 6e-48 unknown protein Potri.016G136900 [exp] 57 / 1e-08 AT3G51580 171 / 2e-49 unknown protein Potri.019G058400 [exp] 44 / 7e-05 AT3G51580 59 / 7e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033958 pacid=23154727 polypeptide=Lus10033958 locus=Lus10033958.g ID=Lus10033958.BGIv1.0 annot-version=v1.0 ATGGAAATCGATCTAGCTCATCTTCGGGTTCTGCTTCTTCTTGTTGTTGTATTACTCCTCGCTGGCTTGTCCTGGGCTGATGATACAAAGGTGGATGTGA ATGGGAAAAACAATCCGGATCCGAAGTTGAAACCTAACAACAGCTCAAACGAGAAAGCTGGCGAGCTGAAATTAGGTGTTACAGATGATGGTGGGCAAAA CGAAAAAAACCCAAAGGAGGAGGAGGATAAAGGAGTTGTGAATCAAGTGAATGAGGTAAAGAAAGGTGGTGTTGTTAATGGTGGGGAAAAGAAAGACTTG AACGTCCAAGTTGGGGATAAGGAGACTGGTAAAGGCAGTGAAGGTAATGCTAGGCAAAGTGGAAATGAGAAGCTGAATGATGAGAAGGCAACTAAACAGG AGGAGGTGGATTTAAAGAATGAGCAAGGAGGGAAGGAGATTTCACATGGTGAAGAATGTGATCCTTCCAACAAGTGCTTGATTCAGGACAGCAATCTGGT TGCTTGCATTAGAGTTCCTGGAAATGATTCTCCAGACCTATTACTTCTGATTCAGAACGATGGAGAAGTTCCAGTCAGCGTCATGATTTTGAGTCCGGAG TTTGTTCAGCTGGAGAAGAAAAGCATTCAACTGCAGCAAAAAGAACACAAAAAGGTCAAAGTGTCCATCAATGGCAAGGGACGGGAGAGCTCCATCGTTC TAAAGACGGGAGCCAGCAGCAGCTGCAGCCTTGACATAACTGATCTGATCGATCATCACTCCGGATCAGACAACATAGAAAACTCTCAAGGGTCCACTTA TGCAACAACCTCCAATCTCCCTCTCTTCCTAGCATGCTTCGCTGGGTTATTAATTGTAGCAGCATCAGCGCGTGGGCTGTGGATTACCATAGCAAGGAGG AGGAAACTGTCCAACAATGCAAGCTCAAATTACCAAAGGCTAGACATGGACTTGCCTGTTTCAGGTATGGGGAAGAAGACGCAATCAGATGATGGATGGG ACAACAACTGGGGAGACGGTTGGGATGATGATGATGGTGGTGGTGATGAAGAGATGCCTAAGACTCCATCAGCAATGCCCGTCACGCCTAGCTTGTCCTC GAAAGGTCTTGCATCGCGCAGCCGGTTGAGCAAAGATGGATGGAAAGATTAG
AA sequence Show only first row Show all	>Lus10033958 pacid=23154727 polypeptide=Lus10033958 locus=Lus10033958.g ID=Lus10033958.BGIv1.0 annot-version=v1.0 MEIDLAHLRVLLLLVVVLLLAGLSWADDTKVDVNGKNNPDPKLKPNNSSNEKAGELKLGVTDDGGQNEKNPKEEEDKGVVNQVNEVKKGGVVNGGEKKDL NVQVGDKETGKGSEGNARQSGNEKLNDEKATKQEEVDLKNEQGGKEISHGEECDPSNKCLIQDSNLVACIRVPGNDSPDLLLLIQNDGEVPVSVMILSPE FVQLEKKSIQLQQKEHKKVKVSINGKGRESSIVLKTGASSSCSLDITDLIDHHSGSDNIENSQGSTYATTSNLPLFLACFAGLLIVAASARGLWITIARR RKLSNNASSNYQRLDMDLPVSGMGKKTQSDDGWDNNWGDGWDDDDGGGDEEMPKTPSAMPVTPSLSSKGLASRSRLSKDGWKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64385			unknown protein		Lus10033958 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10019530 [exp]	2.2	0.9051
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	2.4	0.9006
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	8.7	0.9067
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	9.0	0.9101
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	9.2	0.8703
					Lus10021189 [exp]	11.0	0.8882
AT3G07440			unknown protein		Lus10020404 [exp]	14.1	0.9087
AT5G64816			unknown protein		Lus10009081 [exp]	16.0	0.8736
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	17.1	0.9071
AT2G42730			F-box family protein (.1.2)		Lus10028722 [exp]	17.8	0.8516

Compare expression of checked genes

Lus10033958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.