Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06410 340 / 2e-112 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 335 / 1e-110 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 330 / 2e-108 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 218 / 2e-66 C3HZnF ZFN1 zinc finger protein 1 (.1) AT1G04990 175 / 8e-50 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G16540 148 / 4e-40 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G32930 125 / 3e-31 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 120 / 2e-29 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 119 / 7e-29 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT3G48440 116 / 5e-28 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002880 [exp] 594 / 0 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10013476 [exp] 306 / 1e-99 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 306 / 2e-99 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 303 / 2e-98 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 290 / 5e-94 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 191 / 5e-55 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 182 / 5e-52 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 177 / 1e-49 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 158 / 3e-43 AT3G02830 510 / 0.0 zinc finger protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022500 [exp] 443 / 6e-153 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 439 / 6e-151 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 263 / 7e-83 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 259 / 2e-81 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 207 / 1e-61 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 196 / 3e-57 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 124 / 8e-31 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 121 / 2e-29 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 116 / 7e-28 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.012G092500 [exp] 114 / 3e-27 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10033962 pacid=23154710 polypeptide=Lus10033962 locus=Lus10033962.g ID=Lus10033962.BGIv1.0 annot-version=v1.0 ATGTACGGACGAGGTCAGGAGGGTTCGCAGTCGGATCCGTCCTCGGAATGGACTACTACTGCTCCAGGACCCGAAACCGGCCTCGAAGAGGGACTCTGGC AGTTGGGATTGGGTGGAGGAGAAGGCGAAAGCGGGTACCCGGAAAGGCCCGACGAGGCCGATTGTATCTACTACTTGAGGACAGGGTTTTGCGGGTACGG AGCGAGGTGTCGGTTCAACCATCCACGTGACCGAGCTGCGGTACTGGGAGCTGCTAGGGCTGGCGGAGGAGAATTCCCCGAACGATATGGCCAGCCTGTG TGTCAGTATTATATGAGGACTGGAAGTTGTAAATTTGGTGCTTCCTGCAAATATCACCACCCGAAGCAGGCACTTGGTTCAGTTGCTCCCGTGCCTCTAA ATTACTATGGTTACCCATTGCGTCCGGGTGAAAAGGAATGTACATACTATATAAAAACTGGGCAGTGTAAGTTTGGCGCTACATGTAAATTTGATCATCC GCAGCCACCTAATGTACAAGTTCCCCCACAGTCACTGCCGCCACAAATAGCACCCATGGCCAGTCCGTTAGCTGCTCCTGCATTATACCCACCACCGATG CAGTCTCCGTCAGTTCCTTCATCCCAACAGTACGGGGTATTAGTTGCTAGGTCTCCTTTGATGCAAAGCTCATATGCACAAGGTCCTTATGGTCCCATGC TTCTTTCACCAGGTGGGGTGGTTTCCTACCCCAGCTGGAGTCCCTATCCGGGACCAGTTAGTCCTGTAACGCAGTCTCCTGGTACACAGTCTGCACTTGG TTCAAGTTCTCTGTATGGGATAACTCAATTGTCTCCCTCAGCGCCTGCCTATACTGGGGCTTATGCACCTTTGCCTTCTTTGATTGGTCCTTCAAGTAGC AGCCAAAGGGATACTTCTTTTCCAGAGAGACCTGGTCAACCAGAATGTCAATACTATTTGAAGACTGGTGATTGTAAATTTGGATCATCATGTAGATACC ACCATCCATCAGAACTAAGTGCACCAAAATCAAATCTTGCTCTTAGTCCCTTGGGCCTTCCCCTTCGCCCGGGGGCACCACTTTGTACTCACTATGCGCA GCGAGGACAATGCAAGTTTGGGTCTGCATGCAAATTTGATCATCCAATGGGAATGAGCTACAGTCCCTCTGCATCATCCTTGGTCGATATGCCGGTCGCA CCATATCCCGTGGGCTCTTCACTCGGTACTCTAGCTCCATCGTCCTCATCCACAGATTTGCGTCCGGAACTGATTTCAGGATCCAGCAAGGAGTCCAGTT CTAGCAGGATAGCATCATCACCAAGCGGGTTCATTGGTTCAACTTTCTCAAAGAGCGAAACTGCTTCTCCTTCAAGCATGCAGTTCTCTGGCTCGTTAAC AGGCAGCAGCAGCACTGCCCATGCTTCAAGTTAG
AA sequence Show only first row Show all	>Lus10033962 pacid=23154710 polypeptide=Lus10033962 locus=Lus10033962.g ID=Lus10033962.BGIv1.0 annot-version=v1.0 MYGRGQEGSQSDPSSEWTTTAPGPETGLEEGLWQLGLGGGEGESGYPERPDEADCIYYLRTGFCGYGARCRFNHPRDRAAVLGAARAGGGEFPERYGQPV CQYYMRTGSCKFGASCKYHHPKQALGSVAPVPLNYYGYPLRPGEKECTYYIKTGQCKFGATCKFDHPQPPNVQVPPQSLPPQIAPMASPLAAPALYPPPM QSPSVPSSQQYGVLVARSPLMQSSYAQGPYGPMLLSPGGVVSYPSWSPYPGPVSPVTQSPGTQSALGSSSLYGITQLSPSAPAYTGAYAPLPSLIGPSSS SQRDTSFPERPGQPECQYYLKTGDCKFGSSCRYHHPSELSAPKSNLALSPLGLPLRPGAPLCTHYAQRGQCKFGSACKFDHPMGMSYSPSASSLVDMPVA PYPVGSSLGTLAPSSSSTDLRPELISGSSKESSSSRIASSPSGFIGSTFSKSETASPSSMQFSGSLTGSSSTAHASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	0	1
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	1.0	0.9496
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	3.7	0.8029
AT4G33480			unknown protein		Lus10003851 [exp]	3.9	0.8070
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	5.1	0.8460
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	8.5	0.8121
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	9.5	0.7684
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	10.0	0.8098
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	10.2	0.7663
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	10.4	0.7283
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	11.4	0.7436

Compare expression of checked genes

Lus10033962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.