Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18580 461 / 5e-158 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) AT5G44090 92 / 1e-19 Calcium-binding EF-hand family protein (.1) AT1G54450 91 / 4e-19 Calcium-binding EF-hand family protein (.1) AT5G28850 89 / 6e-19 Calcium-binding EF-hand family protein (.1.2) AT5G28900 88 / 4e-18 Calcium-binding EF-hand family protein (.1) AT1G03960 85 / 4e-17 Calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002884 [exp] 509 / 9e-177 AT5G18580 863 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Lus10022907 [exp] 91 / 7e-19 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 89 / 2e-18 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 89 / 3e-18 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008193 [exp] 87 / 8e-18 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 87 / 9e-18 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10027963 [exp] 85 / 4e-17 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 85 / 5e-17 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 84 / 1e-16 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215300 [exp] 479 / 4e-165 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.010G022300 [exp] 476 / 6e-164 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.019G019500 [exp] 97 / 7e-21 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 94 / 5e-20 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G227100 [exp] 92 / 3e-19 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.002G035800 [exp] 89 / 1e-18 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033964 pacid=23154828 polypeptide=Lus10033964 locus=Lus10033964.g ID=Lus10033964.BGIv1.0 annot-version=v1.0 ATGTACAGTGGTTCCAGCGACGGCGAGAGCCATGATCCCCAAAGAAAGATCCCACCGCCGTCCTCAATGCTGTGGCTGCGGAATCTCCTAAGGTGCGGAA TCTCCGACGAGCTTGAGACGAAGAGAATTTTGCTGGATATCTTTAAGGACAAGCAGCAAAAGAGCGCGGAAGCTGGTACGATCCCTAGTTTCTATAAGAA GTTTCCATTTCTGTTTCACATTGTTTCATTTCAGAAACCGGAAGATGGATCCATCAGTCATAGGGTGCAGAGACTGGCTAAGTATCGATTTTTAAAGAAG CAATCAGATCTCTTACTGAATGCTGATGACTTGGATGCCATGTGGGTTTGCTTGAGAGAAAATTGTGTTATCGATGATGCTACAGGTGCAGAGAAGATGA ATTACGAAGATTTTTGTCATATTGCTTCTGTATGTACGGAGCAAATAGGTCCCAAATGTCGAAGGTTTTTCAGCCCATCCAATTTCATGAAATTTGAGAA AGATGAATCAGGAAGAATTGCCATTCTCCCCTTTTATCTCTATGTGATGCGCACGGTTTCGCTCACACAAGCTAGGATAGATATGAGTGAGCTTGATGAA GACTCTGATGGCTTCCTTCAACCCCATGAAATGGAGGCCTATATACGAGGTCTTATACCCAATTTAGCACAATTGCGGGATATGCCTGGAGTATTTATTC AAATGTACTGTCGCATTGCAGCACATAAATTTTTCTTCTTTTGTGATCCTCACAGGCGAGGGAAAGCTTGCATTAAAAAGGTGCTTCTCAGCAACTGCCT GCAGGAACTAATGGAGTTGCACCAGGAAACTGAGGAGGAAGTGACAGACACTGAGCAAGCTGAAAACTGGTTCTCTCTGACATCTGCACAGCGCATATGT GAATCATGTCCGTCTTGCTCCTTATCTCCTTATGCCACCGTTTGTTGGTCCTCTGATGGCTTCCTTCAACCCCATGAAATGGAGGCCTATATTCGAGGTC TTATACCCAATTTAGCACAATTGCGGGATATGCCTGGAGTATTTATTCAAATGTACTGTCGCATTGCTGCACATAAATTTTTCTTCTTTTGTGACCCTCA CAGGCGAGGGAAAGCTTGCATTAAAAAGGTGCTTCTCAGCAACTGCCTGCAGGAACTAATGGAGTTGCACCAGGAAACTGAGGAGGAAGTGACAGACACT GAGCAAGCTGAAAACTGGTTCTCTCTGACATCTGCACAGCGCATATGTGATATGTTCCTTGATCTTGATAAAGATAGAAATGGGACGTTGAGTAAACAAG AGCTTCGGGAATATGCAGATGGGACATTGACAGAAATCTTTATTGAAAGAGTATTTGATGAACATGTCCGCCGTGGCAAGAGTGGAACTGGAAATGCACG AGAGATGGATTTTGAAAGTTTCCTAGACTTTGTTCTGGCCCTGGAAAACAAAGATACCCCAGAAGGGTTGACTTATTTGTTTCGTTGTCTTGATCTTCAA GGACGGGGATTCCTTACAACAGCTGATATTCACTCCCTTTTCAGAGACGTGCATCATAAATGGATTGAGGGTGGGAACTATGAGCTGTGTATCGAGGATG TGAGAGATGAGATATGGGACATGGTAAAGCCAGGTGACCCGCTGAGGATAACGCTTGGTGATCTTCTGGGGTGTAAACAAGGGGGTACAGTTGCTAGCAT GCTGATAGATGTAAGGGGTTTCTGGGCCCATGATAATAGGGAAAATCTTCTCCAGGAAGAGGAAGAGCCTGGAGAGGAAGAATAA
AA sequence Show only first row Show all	>Lus10033964 pacid=23154828 polypeptide=Lus10033964 locus=Lus10033964.g ID=Lus10033964.BGIv1.0 annot-version=v1.0 MYSGSSDGESHDPQRKIPPPSSMLWLRNLLRCGISDELETKRILLDIFKDKQQKSAEAGTIPSFYKKFPFLFHIVSFQKPEDGSISHRVQRLAKYRFLKK QSDLLLNADDLDAMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKFEKDESGRIAILPFYLYVMRTVSLTQARIDMSELDE DSDGFLQPHEMEAYIRGLIPNLAQLRDMPGVFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQETEEEVTDTEQAENWFSLTSAQRIC ESCPSCSLSPYATVCWSSDGFLQPHEMEAYIRGLIPNLAQLRDMPGVFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQETEEEVTDT EQAENWFSLTSAQRICDMFLDLDKDRNGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGTGNAREMDFESFLDFVLALENKDTPEGLTYLFRCLDLQ GRGFLTTADIHSLFRDVHHKWIEGGNYELCIEDVRDEIWDMVKPGDPLRITLGDLLGCKQGGTVASMLIDVRGFWAHDNRENLLQEEEEPGEEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10033964 [exp]	0	1
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	26.6	0.6795
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	36.2	0.6365
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	65.8	0.5897
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	91.0	0.5889
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	97.4	0.5734
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	105.0	0.6125

Compare expression of checked genes

Lus10033964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.