Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 724 / 0 Protein kinase superfamily protein (.1.2) AT5G13160 560 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 543 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 511 / 1e-179 Protein kinase superfamily protein (.1.2) AT3G20530 491 / 2e-172 Protein kinase superfamily protein (.1) AT3G07070 480 / 7e-168 Protein kinase superfamily protein (.1) AT2G28590 480 / 2e-167 Protein kinase superfamily protein (.1) AT1G20650 469 / 4e-164 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G24790 462 / 2e-161 Protein kinase superfamily protein (.1) AT4G13190 463 / 3e-161 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012814 [exp] 861 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 576 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 573 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 568 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 567 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 563 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 511 / 2e-180 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 508 / 3e-178 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 486 / 6e-170 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205700 [exp] 774 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 768 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 623 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 589 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 585 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 576 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 549 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 505 / 4e-178 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 500 / 1e-175 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 495 / 9e-174 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033966 pacid=23154640 polypeptide=Lus10033966 locus=Lus10033966.g ID=Lus10033966.BGIv1.0 annot-version=v1.0 ATGGGTGGGTGCTTTCCTTGTTTCGGATCATCGAACAAGAACGGCGGCGGAGCTGGTGGCAAAGAAGTTGCGAGGAAAGATTCGGTCAAGGAAGCCTCTG TTACTCAGTCTCAACATGTCACCAGAGTTGGCTCAGACAAATCAAAATCTCGGGGTGGTTCTGAGTCGAAGAAAGAGCCACCGATCCCGAAAGATGGATC AACAGCTCATATTGCAGCTCAAACGTTCACATTCCGTGAGCTAGCTGCTGCCACCAAGAATTTTAGACCTGAGTGCTTGTTGGGAGAAGGAGGGTTTGGG CGTGTCTATAAAGGGCGACTCGAAACCACGGGACAGGTCGTAGCGGTGAAACAACTTGACCGGAATGGACTGCAAGGAAACAGAGAGTTTTTGGTTGAAG TTCTGATGCTCAGTCTGCTACACCACCCTAACCTTGTCAACTTAATTGGCTATTGTGCTGATGGGGATCAGCGGCTACTTGTCTACGAATACATGCCCTT GGGTTCACTGGAGGATCATCTACATGACCTTCCGACAGACAAAGAACCATTGGACTGGAATACAAGAATGAAGATAGCAGCCGGGGCAGCAAAGGGGTTG GAGTACTTGCATGATAAAGCAAACCCACCTGTCATCTACAGAGATTTAAAATCATCAAACATCCTTCTTGACGAGGGGTTTCACCCCAAGTTATCAGATT TCGGACTAGCCAAACTTGGTCCTGTTGGTGACAAGACTCATGTCTCGACACGTGTCATGGGGACTTACGGTTATTGTGCTCCCGAATATGCTATGACTGG ACAACTTACACTGAAATCTGATGTTTACAGCTTCGGAGTAGTGTTTCTCGAACTCATCACCGGTCGAAAGGCCATTGACAACACAAGGGCTCCTGGAGAA CACAATCTCGTCGCATGGGCAAGGCCATTATTCAAAGATCGTAGGAAGTTCCCAAAAATGGCAGATCCGTTACTTCAAGGGCGGTACCCAATGCGAGGGC TATATCAAGCACTTGCAGTCTCGGCGATGTGCTTGCAAGAACAAGCTGCTACAAGACCATTGATAGGGGATGTGGTTACGGCGTTGTCATATTTAGCTTC TCAGACTTATGACCCAAATGCCCCCAACCAGAGTAACAGAGTAGGATCATCTACTCCGAGGAGCAGGGATGACCGAAGAAGCATGGGAGATGGAGGAATG GATAGCCCTGATGGTAGGCTTGGGTCTCCATCTTTACACAGGAACTCGCCTGATTACAGAAAGAGGGACCGGCAGAGAGAAGTGGGGGAATCTGGTGGAG GTTCGGGCAGAAGGTGGGGTGGTCTGGAGGAGCTAGAACGAAACGATTCTCAGAGAGACAGTCCGGTCAATGGGGGAAGCAGCAGAATGAGGGAAACTCC GAGGAATCGCGATATAGATAGGGAACGAGCAGTTGCGGAGGCGAAGGTATGGGGAGAGAACTGGAGGGAGAAGAAGCGGGCAAATGCAGCTGGTAGCTTT GATGGTGAGAGTAGTAATCATGAATGA
AA sequence Show only first row Show all	>Lus10033966 pacid=23154640 polypeptide=Lus10033966 locus=Lus10033966.g ID=Lus10033966.BGIv1.0 annot-version=v1.0 MGGCFPCFGSSNKNGGGAGGKEVARKDSVKEASVTQSQHVTRVGSDKSKSRGGSESKKEPPIPKDGSTAHIAAQTFTFRELAAATKNFRPECLLGEGGFG RVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPTDKEPLDWNTRMKIAAGAAKGL EYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGE HNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVSAMCLQEQAATRPLIGDVVTALSYLASQTYDPNAPNQSNRVGSSTPRSRDDRRSMGDGGM DSPDGRLGSPSLHRNSPDYRKRDRQREVGESGGGSGRRWGGLEELERNDSQRDSPVNGGSSRMRETPRNRDIDRERAVAEAKVWGENWREKKRANAAGSF DGESSNHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	0	1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	3.0	0.9171
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	5.1	0.9111
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	7.3	0.8961
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	9.7	0.9010
AT1G24560			unknown protein		Lus10013022 [exp]	11.0	0.9018
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	11.5	0.8917
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	13.2	0.8989
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	14.6	0.9104
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	15.2	0.8743
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	16.2	0.8933

Compare expression of checked genes

Lus10033966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.