Lus10033967 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06400 1619 / 0 CHR11 chromatin-remodeling protein 11 (.1.2.3)
AT5G18620 1615 / 0 CHR17 chromatin remodeling factor17 (.1.2)
AT3G06010 476 / 3e-144 ATCHR12 Homeotic gene regulator (.1)
AT5G19310 466 / 2e-141 Homeotic gene regulator (.1)
AT5G66750 448 / 3e-138 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
AT2G13370 461 / 2e-134 CHR5 chromatin remodeling 5 (.1)
AT2G28290 426 / 4e-121 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
AT2G25170 409 / 2e-118 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
AT2G44980 382 / 2e-113 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
AT4G31900 370 / 6e-107 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012813 1032 / 0 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2)
Lus10034064 469 / 4e-142 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
Lus10010522 466 / 5e-141 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1)
Lus10022423 472 / 3e-138 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1)
Lus10041735 445 / 2e-136 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Lus10009711 462 / 1e-135 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
Lus10005339 419 / 7e-122 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Lus10041019 417 / 7e-121 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Lus10012798 401 / 3e-113 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G021400 1656 / 0 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3)
Potri.008G205600 1651 / 0 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3)
Potri.008G149900 464 / 3e-140 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
Potri.010G091200 462 / 3e-139 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1)
Potri.007G026700 450 / 6e-139 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Potri.019G129900 449 / 1e-138 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Potri.001G253400 466 / 3e-136 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1)
Potri.009G047800 461 / 1e-134 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Potri.010G019150 425 / 7e-121 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Potri.008G195900 423 / 3e-120 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00271 Helicase_C Helicase conserved C-terminal domain
CL0123 HTH PF09111 SLIDE SLIDE
CL0023 P-loop_NTPase PF00176 SNF2_N SNF2 family N-terminal domain
CL0023 PF09110 HAND HAND
Representative CDS sequence
>Lus10033967 pacid=23154675 polypeptide=Lus10033967 locus=Lus10033967.g ID=Lus10033967.BGIv1.0 annot-version=v1.0
ATGGCAGGAACAACGAGGCTGGTGGCACAACCATCTTGTATTCAGGGAAAGATGAGGGATTATCAGCTGGCTGGATTAAACTGGCTCATCAGACTGTATG
AGAATGGTATAAATGGAATACTTGCCGATGAGATGGGCCTTGGTAAGACGTTACAAACTATCTCCTTGCTGGGATACTTGCACGAATTCAGAGGGATTCC
TGGTCCACATATGGTAGTTGCACCAAAATCTACACTTGGAAATTGGATGAATGAAATTCGCCGGTTTTGTCCAGTCCTCCGCCCTATCAAGTTCCTCGGC
AACCCTGAAGAAAGGAGGCATATCCGTGAGGATTTGCTTGTTGCTGGGAAGTTTGATGTATGCGTCACAAGTTTTGAAATGGCCATTAAAGAGAAGTCCG
CTCTACGGCGCTTTAGCTGGCGTTACATAATTATTGATGAAGCTCATCGGATAAAGAACGAGAATTCTCTTCTTTCAAAAACAATGCGACTCTTTACTAC
CAACTACCGCTTACTCATCACCGGAACTCCTCTTCAGAACAATCTTCATGAACTATGGGCTCTGCTCAACTTCCTACTACCAGAGATTTTTAGCTCTGCT
GAAACATTTGATGAGTGGTTCCAAATATCTGGTGAGAATGACCAGCAGGAGGTTGTGCAGCAACTGCACAAGGTCCTTCGGCCTTTCCTCCTCAGAAGAT
TGAAGTCTGATGTTGAGAAGGGTTTACCTCCTAAGAAGGAGACAATATTGAAAGTAGGCATGTCCCAGATGCAGAAGCAGTATTATAAAGCTTTACTGCA
GAAAGATCTTGAAGTTGTTAATGCCGGTGGAGAACGTAAACGTCTTTTGAACATAGCAATGCAGTTGCGTAAATGCTGCAATCATCCATACCTATTCCAG
GGTGCTGAACCTGGCCCACCTTACACCACAGGAGATCACCTTGTCACTAGTGCCGGTAAGATGGTTCTGCTGGACAAGTTGCTTCCTAAGTTGAAAGATA
GAGATTCACGAGTTTTGATATTCTCACAGATGACAAGATTGCTCGACATTCTTGAGGATTATCTAATGTTCCGTGGCTATCAATACTGTCGTATTGATGG
AAATACTGGCGGAGATGACCGTGATGCTTCCATTGAAGCCTACAACAAACCGGGAAGTGAGAAGTTTGTGTTCTTGCTGTCAACCAGAGCTGGTGGACTT
GGTATTAATCTTGCTACTGCGGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGATTTGCAAGCGCAGGATCGTGCTCATAGGATTGGTC
AAAAGAAAGAAGTTCAAGTGTTCCGGTTCTGCACAGAGTATACTATTGAAGAAAAGGTCATTGAAAGAGCTTATAAGAAACTTGCTCTTGATGCTTTGGT
TATTCAGCAAGGAAGGCTGGCTGAGCAGAAAGCTGTCAACAAAGATGAGCTGCTTCAAATGGTGAGATTTGGTGCTGAAATGGTTTTCAGCTCAAAGGAT
AGTACAATCACAGATGAGGACATTGACAGAATCATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAGGATGCGA
TTAAATTCAAGATGGACGACACGGCTGAATTGTATGATTTTGATGACGACACGGATGAGAACAAGGTCGACTTCAAAAAACTTGTCAGTGATAACTGGGT
AGAGCCTCCAAAGAGAGAAAGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACAATGCGACAAGGTGCTCCAGCTAAACCTAAGGAGCCTCGA
ATTCCTCGCATGCCACAATTGCATGATTTCCAGTTTTTCAACACTCAGAGGTTAAATGAGTTATATGAAAAAGAAGTACTGTATCTCATGCAAACACATC
AAAAGAATCAGGTAAAAGATACGATAGACGTTGATGAACCTGAAGAGGTTGGAGAACCGTTGACTGCTGAGGAACTTGAAGAAAAGGAGAAGTTGTTAGA
AGAGGGATTCTCTTCGTGGACTAGAAGGGACTTCAGTACATTCATTAGGGCTTGTGAGAAGTATGGAAGAAATGACATTAACAGCATTGCAACTGAAATG
GAAGGCAAAACAGAGGAAGAGGTCGGGAGATATGCAAAAGTTTTCATGGAAAGATATAAAGAACTGAACGATTATGATAGAATCATCAAGAACATTGAAA
GAGGGGAGGGCAGAATTTCTCGTAAAGATGAGATTATGAAAGCCATTAGTAAGAAACTGGATCGCTACAAGAACCCTTGGCTTGAGTTGAAGATCCAGTA
CGGTCAGAACAAAGGGAAGCTGTACAATGAAGAATGTGACCGTTTCATGATGTGCATGATTCACAAGCTAGGATATGGGAATTGGGATGAGCTGAAAGCA
TCATTTCGCACGTGGCCTTTGTTTCGGTTTGACTGGTTTGTCAAGTCTAGAACAACTCAGGAGCTTGCGAGAAGATGCGATACCTTAATCCGATTGGTAG
AGAAGGAAAATCAAGAATATGATGAGAGGGAAAGGCAAGCTCGCAAAGAGAAGAAGCTTGCCAAGCAAAGTATGACACCATCTAAGCGTGGTGGTGGTGG
GAGGCAAGCTGAGAGCCCCCCCAGTAGTCTCAAGAAGCGGAAGCAATCATCCATGGATGATTACCTCCTGACCTCTGGAAAGATGAGGGATTATCAGCTG
GCTGGATTAAACTGGCTCATCAGACTGTATGAGAATGGTATAAATGGAATACTTGCCGATGAGATGGGCCTTGGTAAGACGTTACAAACTATCTCCTTGC
TGGGATACTTGCACGAATTCAGAGGGATTCCTGGTCCACATATGGTAGTTGCACCAAAATCTACACTTGGAAATTGGATGAATGAAATTCGCCGGTTTTG
TCCAGTCCTCCGCCCTATCAAGTTCCTCGGCAACCCTGAAGAAAGGAGGCATATCCGTGAGGATTTGCTTGTTGCTGGGAAGTTTGATGTATGCGTCACA
AGTTTTGAAATGGCCATTAAAGAGAAGTCCGCTCTACGGCGCTTTAGCTGGCGTTACATAATTATTGATGAAGCTCATCGGATAAAGAACGAGAATTCTC
TTCTTTCAAAAACAATGCGACTCTTTACTACCAACTACCGCTTACTCATCACCGGAACTCCTCTTCAGAACAATCTTCATGAACTATGGGCTCTGCTCAA
CTTCCTACTACCAGAGATTTTTAGCTCTGCTGAAACATTTGATGAGTGGTTCCAAATATCTGGTGAGAATGACCAGCAGGAGGTTGTGCAGCAACTGCAC
AAGGTCCTTCGGCCTTTCCTCCTCAGAAGATTGAAGTCTGATGTTGAGAAGGGTTTACCTCCTAAGAAGGAGACAATATTGAAAGTAGGCATGTCCCAGA
TGCAGAAGCAGTATTATAAAGCTTTACTGCAGAAAGATCTTGAAGTTGTTAATGCCGGTGGAGAACGTAAACGTCTTTTGAACATAGCAATGCAGTTGCG
TAAATGCTGCAATCATCCATACCTATTCCAGGGTGCTGAACCTGGCCCACCTTACACCACAGGAGATCACCTTGTCACTAGTGCCGGTAAGATGGTTCTG
CTGGACAAGTTGCTTCCTAAGTTGAAAGATAGAGATTCACGAGTTTTGATATTCTCACAGATGACAAGATTGCTCGACATTCTTGAGGATTATCTAATGT
TCCGTGGCTATCAATACTGTCGTATTGATGGAAATACTGGCGGAGATGACCGTGATGCTTCCATTGAAGCCTACAACAAACCGGGAAGTGAGAAGTTTGT
GTTCTTGCTGTCAACCAGAGCTGGTGGACTTGGTATTAATCTTGCTACTGCGGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGATTTG
CAAGCGCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTGTTCCGGTTCTGCACAGAGTATACTATTGAAGAAAAGGTCATTGAAAGAG
CTTATAAGAAACTTGCTCTTGATGCTTTGGTTATTCAGCAAGGAAGGCTGGCTGAGCAGAAAGCTGTCAACAAAGATGAGCTGCTTCAAATGGTGAGATT
TGGTGCTGAAATGGTTTTCAGCTCAAAGGATAGTACAATCACAGATGAGGACATTGACAGAATCATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGAT
GCTAAGATGAAGAAATTTACAGAGGATGCGATTAAATTCAAGATGGACGACAAATCTGAATACTTCAAGCAAACAATGCGACAAGGTGCTCCAGCTAAAC
CTAAGGAGCCTCGAATTCCTCGCATGCCACAATTGCATGATTTCCAGTTTTTCAACACTCAGAGGTTAAATGAGTTATATGAAAAAGAAGTACTGTATCT
CATGCAAACACATCAAAAGAATCAGGTAAAAGATACGATAGACGTTGATGAACCTGAAGAGGTTGGAGAACCGTTGACTGCTGAGGAACTTGAAGAAAAG
GAGAAGTTGTTAGAAGAGGGATTCTCTTCGTGGACTAGAAGGGACTTCAGTACATTCATTAGGGCTTGTGAGAAGTATGGAAGAAATGACATTAACAGCA
TTGCAACTGAAATGGAAGGCAAAACAGAGGAAGAGGTCGGGAGATATGCAAAAGTTTTCATGGAAAGATATAAAGAACTGAACGATTATGATAGAATCAT
CAAGAACATTGAAAGAGGGGAGGGCAGAATTTCTCGTAAAGATGAGATTATGAAAGCCATTAGTAAGAAACTGGATCGCTACAAGAACCCTTGGCTTGAG
TTGAAGATCCAGTACGGTCAGAACAAAGGGAAGCTGTACAATGAAGAATGTGACCGTTTCATGATGTGCATGATTCACAAGCTAGGATATGGGAATTGGG
ATGAGCTGAAAGCATCATTTCGCACGTCGTCTTTGTTTCGGTTCGATTGGTTTGTCAAGTCTAGAACAACTCAGGAGCTTGCGAGAAGATGCGATACCTT
AATCCGATTGGTAGAGAAGGAAAATCAAGAATTTGACGAGAGGGAAAGGCAAGCTCGCAAAGAGAAGAAGCTTGCCAAGCAAAGTATGACAGCATCTAAG
CGTGGTGGTGGTGGGAGGCAAGCTGAGAGTCCCCCCAGTAGCCTTAAGAAGCGGAAGCAACCGTCCATGGATGATTACCTGACCTCTGTAAGCTTTTTCT
TCTATGATAACCTCTATACGATAATATGCATATTCAAATCCAGTCAATCAAAGATGTCCGAGTCTGAGTTGTCATTCTTTTTGCAGGGAAAGAAGAGAAA
GTAG
AA sequence
>Lus10033967 pacid=23154675 polypeptide=Lus10033967 locus=Lus10033967.g ID=Lus10033967.BGIv1.0 annot-version=v1.0
MAGTTRLVAQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIPGPHMVVAPKSTLGNWMNEIRRFCPVLRPIKFLG
NPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFTTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSA
ETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQ
GAEPGPPYTTGDHLVTSAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGL
GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKD
STITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDTDENKVDFKKLVSDNWVEPPKRERKRNYSESEYFKQTMRQGAPAKPKEPR
IPRMPQLHDFQFFNTQRLNELYEKEVLYLMQTHQKNQVKDTIDVDEPEEVGEPLTAEELEEKEKLLEEGFSSWTRRDFSTFIRACEKYGRNDINSIATEM
EGKTEEEVGRYAKVFMERYKELNDYDRIIKNIERGEGRISRKDEIMKAISKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMMCMIHKLGYGNWDELKA
SFRTWPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKQSMTPSKRGGGGRQAESPPSSLKKRKQSSMDDYLLTSGKMRDYQL
AGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIPGPHMVVAPKSTLGNWMNEIRRFCPVLRPIKFLGNPEERRHIREDLLVAGKFDVCVT
SFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFTTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLH
KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTSAGKMVL
LDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDL
QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELD
AKMKKFTEDAIKFKMDDKSEYFKQTMRQGAPAKPKEPRIPRMPQLHDFQFFNTQRLNELYEKEVLYLMQTHQKNQVKDTIDVDEPEEVGEPLTAEELEEK
EKLLEEGFSSWTRRDFSTFIRACEKYGRNDINSIATEMEGKTEEEVGRYAKVFMERYKELNDYDRIIKNIERGEGRISRKDEIMKAISKKLDRYKNPWLE
LKIQYGQNKGKLYNEECDRFMMCMIHKLGYGNWDELKASFRTSSLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKQSMTASK
RGGGGRQAESPPSSLKKRKQPSMDDYLTSVSFFFYDNLYTIICIFKSSQSKMSESELSFFLQGKKRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G18620 CHR17 chromatin remodeling factor17 ... Lus10033967 0 1
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10020235 4.6 0.8582
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10026862 9.4 0.8475
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Lus10004188 9.8 0.8470
AT5G25800 Polynucleotidyl transferase, r... Lus10042779 11.1 0.8368
AT3G45890 RUS1 ROOT UVB SENSITIVE 1, Protein ... Lus10001047 11.7 0.7891
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Lus10015787 12.4 0.8184
AT2G44980 ASG3 ALTERED SEED GERMINATION 3, SN... Lus10028186 13.9 0.8169
AT2G25180 GARP ARR12 response regulator 12 (.1) Lus10005340 15.9 0.8063
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Lus10003074 15.9 0.8117
AT1G48870 Transducin/WD40 repeat-like su... Lus10033525 18.2 0.7677

Lus10033967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.