Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18640 462 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 438 / 2e-154 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G44810 76 / 4e-15 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 70 / 5e-13 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 67 / 8e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 65 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 65 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 65 / 2e-11 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT4G13550 64 / 5e-11 triglyceride lipases;triglyceride lipases (.1) AT5G42930 64 / 5e-11 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012812 [exp] 275 / 2e-92 AT5G18640 154 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 75 / 5e-15 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 73 / 2e-14 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 74 / 3e-14 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 72 / 2e-13 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 69 / 2e-12 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 67 / 4e-12 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 67 / 9e-12 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 67 / 1e-11 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019500 [exp] 488 / 5e-174 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 78 / 8e-16 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 72 / 9e-14 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 71 / 2e-13 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 71 / 2e-13 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G054800 [exp] 70 / 6e-13 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 70 / 6e-13 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 69 / 1e-12 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G231600 [exp] 69 / 2e-12 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 66 / 1e-11 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10033968 pacid=23154652 polypeptide=Lus10033968 locus=Lus10033968.g ID=Lus10033968.BGIv1.0 annot-version=v1.0 ATGGGAAAGAAGGTGGTTCACGGTGGGAATGTTGACAGTTCTTCTACTCGTTTCTTCCTCTTACGGGAGAGTTGGTTTTGCAATTCAGTTTTGCCTGAGC TAAGGAGAAAGGAGTATGCGGAGTTGGATCATACTCCGGTTTACAACCACACTTTGGCTACAATATTGGTGGAGTATGCTTCTGCGGTGTATGTTTCAGA TATGACTGAACTTTTTACTTGGACATGCTCAAGATGCAATGGTTTAACGAAGGGATTTGAAGTTATCGAGCTGATATTTGATGTCCAGCACTGCTTAGAG GCATATGTTGGAGTTGCTCAGGATCTAAATTCTATTGTTATTGCCTTTAGAGGAACTCAGGAACACAGCTTACAGAATTGGATTGAAGACCTCTACTGGA AGCAGCTTGATTTAGATTATCCTGGAATGCCTGATGCAATGGTGCATCATGGGTTCTATTCTGCATACCACAACACCACAATACGGTCTGGAATTCTTAA AGCCATTAAAAAAGCCAAGCAGCATTATGGGGAGCTTGGCATCATGTTGACTGGTCATTCAATGGGTGCAGCCATGGCTGCTTTCTGTGCACTTGATCTA GTAGTCAACCATGAAGCTGAACAAGTTCAAGTTCTAACATTTGGACAGCCCCGCATTGGCAATTCAGTTTTTGCATCCTATTATAAGGATCTAGTGCCTA ATGCGATCAGAGTGGTAAATGGACGTGACATTGTACCTCATTTGCCCCCATACTATACTATATTCCCACGGAAGACATACCATCACTTTGCCAGAGAGGT TTGGTTGTATAACCTTGAATTGGGAAGTCTTGTTTATATGGTTGAGAAGGTCTGTGACGACTCTGGCGAAGACCCTACTTGCAGCAGGTCGGTGTTATGG ACTAGTGTTTCGGACCATTTATCCTACTTTGGCGTTGATTTATGCGGAGACGTGGACTTGTCTTGTGGGATTGTGATGCATCCTGGTTTAAAGGAGTTTG GCACAACAGATCCGAAGGGTAATTTCGTTCTTTCGAGAGTTCCTACCTCCTCTACACTGAAAATGAAGGCAGAAACTGTTTCGGCACACAGTGATTCATA G
AA sequence Show only first row Show all	>Lus10033968 pacid=23154652 polypeptide=Lus10033968 locus=Lus10033968.g ID=Lus10033968.BGIv1.0 annot-version=v1.0 MGKKVVHGGNVDSSSTRFFLLRESWFCNSVLPELRRKEYAELDHTPVYNHTLATILVEYASAVYVSDMTELFTWTCSRCNGLTKGFEVIELIFDVQHCLE AYVGVAQDLNSIVIAFRGTQEHSLQNWIEDLYWKQLDLDYPGMPDAMVHHGFYSAYHNTTIRSGILKAIKKAKQHYGELGIMLTGHSMGAAMAAFCALDL VVNHEAEQVQVLTFGQPRIGNSVFASYYKDLVPNAIRVVNGRDIVPHLPPYYTIFPRKTYHHFAREVWLYNLELGSLVYMVEKVCDDSGEDPTCSRSVLW TSVSDHLSYFGVDLCGDVDLSCGIVMHPGLKEFGTTDPKGNFVLSRVPTSSTLKMKAETVSAHSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	1.4	0.9524
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	6.2	0.9406
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	7.5	0.9343
AT2G37480			unknown protein		Lus10025314 [exp]	7.9	0.9248
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	9.3	0.9418
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	10.0	0.9130
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	11.1	0.9210
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	12.0	0.9284
AT4G19160			unknown protein		Lus10038244 [exp]	13.1	0.9389
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	14.0	0.9348

Compare expression of checked genes

Lus10033968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.