Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 339 / 5e-118 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 314 / 4e-108 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 300 / 4e-102 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT3G18290 180 / 3e-51 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 169 / 2e-47 zinc ion binding (.1) AT1G18910 160 / 3e-44 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012811 [exp] 536 / 0 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 188 / 9e-58 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10034346 [exp] 172 / 2e-48 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10005111 [exp] 172 / 2e-48 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10008628 [exp] 167 / 1e-46 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042190 [exp] 133 / 3e-35 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 101 / 3e-26 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 81 / 4e-17 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205400 [exp] 468 / 3e-169 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 357 / 4e-125 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G005700 [exp] 322 / 8e-111 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 308 / 1e-105 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 307 / 2e-105 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.010G122200 [exp] 180 / 3e-51 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 178 / 1e-50 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 177 / 2e-50 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 155 / 1e-42 AT1G74770 1199 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10033969 pacid=23154694 polypeptide=Lus10033969 locus=Lus10033969.g ID=Lus10033969.BGIv1.0 annot-version=v1.0 ATGGAGGGCGCCGCTCCGTCCAATGAACGCCTTGGTTTTGGGAAGATGGGTTACGGATGCGGGAATTGCAGGAGGAGATGCAAGCTTCGAGCATCTCGCT GCAATGAAATCTTCTCCTGCCGCCATTGCCACAATGAGGCTGCGAGCATGTTGAAAAATATCAACGATCGCCACGAGTTGGATCGATCTGATGTCAAGCA AGTTGTATGTGAAGTTTGTGACACAGAGCAGCCGGTTGCCCAAGTTTGTACAAACTGTGGTGTCAACATGGGGGAATACTTCTGTTCCAAATGCAAATTC TTTGACGACGATACGGAGAAAGGACAATTCCATTGTGATGATTGTGGCATCTGCAGGGTTGGTGGTCGAGAGAACTTCTTCCACTGCAAGAAGTGCGGTT CTTGCTATGCAATTTCTCTCCGGGACAACCATTCTTGTGTGGAGAACTCTATGCACCACCACTGCCCAATTTGTTACGAGTACTTATTTGACTCCATGAA GGACACCATAGTAATGAAATGTGGTCACACAATGCACTGTGAATGTCACTATGAAATGATAAAGCGGGACCGATTTTGTTGTCCAATATGCTCAAAGTCT GTCATCGACATGTCCAAGACTTGGAAGAGCTTAGATGAGGAGATAGACGCTACAGTCATGCCAGAGGATTACCGATATAAAAAGGTGTGGATCCTATGCA ACGATTGCAATGACACAACAGAAGTGTATTTCCATATAATTGGACAGAAATGCAGCCACTGCAAATCATACAACACAAGAACTATTCAACCTCCAGTTCT TCCGCAACAGTGA
AA sequence Show only first row Show all	>Lus10033969 pacid=23154694 polypeptide=Lus10033969 locus=Lus10033969.g ID=Lus10033969.BGIv1.0 annot-version=v1.0 MEGAAPSNERLGFGKMGYGCGNCRRRCKLRASRCNEIFSCRHCHNEAASMLKNINDRHELDRSDVKQVVCEVCDTEQPVAQVCTNCGVNMGEYFCSKCKF FDDDTEKGQFHCDDCGICRVGGRENFFHCKKCGSCYAISLRDNHSCVENSMHHHCPICYEYLFDSMKDTIVMKCGHTMHCECHYEMIKRDRFCCPICSKS VIDMSKTWKSLDEEIDATVMPEDYRYKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTIQPPVLPQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	2.0	0.9355
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	3.7	0.9294
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	3.7	0.8785
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	5.7	0.9245
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	6.5	0.9282
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	6.7	0.8950
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	10.4	0.9017
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	12.0	0.8971
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10005285 [exp]	14.1	0.8579
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	15.5	0.8702

Compare expression of checked genes

Lus10033969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.