Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15640 325 / 3e-109 unknown protein AT3G21465 323 / 2e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012810 [exp] 642 / 0 AT4G15640 391 / 2e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205300 [exp] 353 / 4e-120 AT3G21465 429 / 8e-150 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033970 pacid=23154672 polypeptide=Lus10033970 locus=Lus10033970.g ID=Lus10033970.BGIv1.0 annot-version=v1.0 ATGAAACTCTTCTCCAGCTGCCGTCGGCTTGATCGGCTTTTGAAGTCGTCGATTCCGTTCAATGCCGCATCAAGCTGCCGCCACTTTTCCTCCGAGTCCC GAATCCTTGTTGCTCCCGGGGCTTCTCTCCAATGGCTACACCAGCAGAACGATACGTTTTCTTCTATTCGTTTCCCAGGTCATTACGCTGCCAAGACATA TTTCTCTACGAAATCGGGTAGCGCTGAGAACAATCCAACAGATTCCGTGAAGGAGTTCCACGAGAAGATTCTTGAGTCAGTCAATGCTAAGAGGACGATG GCTCCGAATGCCTGGTTGTGGTCACTCATCGAGAAATGTCATAACCACAAAGATATTGAGCTTCTCTTTGATTCTTTGGAGAATCTCCGGAGATTTCGGC TTTCAAATCTCCGAATTCATGATAATTTCAACTGCAACCTCTGCCGTGAAATTGCTAAAGCTTGTGCTCGTGCAGGAGCCATTGATTTTGCTCCCATTCT TCAGAAATATGCTAAGGATCATAACGATGCCAAATTAATGGTTGAAGTAGTGGAGCTGATGAGAAAGAACGATGTGCCACTTCAACCTAGTACAGCAGAT ATTGTTTTCAGAGCATTCTGGTTTTTCTTTGCTGCTTTTGTCATGATTATTATACTCTCTCGGTGTGGCATTCACAGTATCTGTAACAATGTGGATAATT GGGATTTGATCTTGAAGTACTCCAAGAAGTTTTCCAAGGCTGAAGTTCAATTAAGAAGAGCTGCTTTTGATGCATGGATGGATTTAGCTGCCAAAAGAGG GGACACAAAGGCATTATGGGAAATCGAAAAGCTGCGATCTCAGACAATGAAGCAGCACAGCCTTGTCACTGCGTTCTCTTGTGCCAAGACTTTGGCTGAG ACGAAGAAGTCGGGCATTGTGGCAGAATTCCAGAAATTAGTGAGCGAATGGCCGGTGGATGTGATTAAGCACTGTCCAGAAGAAGAAAAGAAGGGACTAG CATCTACATTGAAGTCTGATATCCCGGTCATGATCACCTCTGTAATGAACATGGGGTTAGAGGTGAATTCAGATATAGAGAAACTAACCAGCAAGTTACC AGCAATTTGTGCTGGCTCAATCCTTTCCTCATTCAGCAGGTGA
AA sequence Show only first row Show all	>Lus10033970 pacid=23154672 polypeptide=Lus10033970 locus=Lus10033970.g ID=Lus10033970.BGIv1.0 annot-version=v1.0 MKLFSSCRRLDRLLKSSIPFNAASSCRHFSSESRILVAPGASLQWLHQQNDTFSSIRFPGHYAAKTYFSTKSGSAENNPTDSVKEFHEKILESVNAKRTM APNAWLWSLIEKCHNHKDIELLFDSLENLRRFRLSNLRIHDNFNCNLCREIAKACARAGAIDFAPILQKYAKDHNDAKLMVEVVELMRKNDVPLQPSTAD IVFRAFWFFFAAFVMIIILSRCGIHSICNNVDNWDLILKYSKKFSKAEVQLRRAAFDAWMDLAAKRGDTKALWEIEKLRSQTMKQHSLVTAFSCAKTLAE TKKSGIVAEFQKLVSEWPVDVIKHCPEEEKKGLASTLKSDIPVMITSVMNMGLEVNSDIEKLTSKLPAICAGSILSSFSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15640			unknown protein		Lus10033970 [exp]	0	1
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10025004 [exp]	2.8	0.9166
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	4.0	0.9204
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	5.7	0.8996
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	6.1	0.9391
AT1G10780			F-box/RNI-like superfamily pro...		Lus10022971 [exp]	7.0	0.8899
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	7.1	0.9208
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	7.3	0.8888
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	7.5	0.9329
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	10.7	0.9034
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	11.0	0.9199

Compare expression of checked genes

Lus10033970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.