Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010734 [exp] 181 / 3e-56 AT1G69980 159 / 1e-47 unknown protein Lus10029192 [exp] 165 / 8e-52 ND / Lus10024766 [exp] 162 / 1e-50 ND / Lus10009191 [exp] 161 / 6e-50 ND / Lus10010252 [exp] 162 / 3e-49 ND / Lus10012669 [exp] 150 / 2e-45 ND / Lus10010593 [exp] 141 / 8e-43 ND / Lus10025380 [exp] 147 / 1e-40 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10034512 [exp] 132 / 9e-40 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10033972 pacid=23154820 polypeptide=Lus10033972 locus=Lus10033972.g ID=Lus10033972.BGIv1.0 annot-version=v1.0 ATGTCTTCAAGCAAGTTCAACGAGAATGTTATGAACAAGTTTCGCCGCCCTTATGAGTCAAAGGATTTGTTCACCTACTTTGGAGAAGAAGTGAAGTGCG ATTGCGGATTTCGTGCAGCGAGACTAATGAAGCTGAAGTTCGAGAAATATTTCAATTGTCGTTTCTATCACTGTAGGTTTGAGAAGAAGTTGGAGGTGGT GTTGGCTAAGAACTCGGTGAGGAGTGAGATGCGAGCTACAATGGAGACGAGGCTTGTTGAGAAGGACGCTAAGATTGAAGTTGCTCGTACTGAATGGGCA GTTGAGAGGGCAGGCATCATAAAGTGTAAGAATAGATACTTCGTCGCAGCACTATGTGTAGCATCCGCTTACACTCATAACTCTGCTAGCATCAGTGGGA GCGATCCTGAAGCCACATCTTCCCACCAAGTTCTTGCTCCATTTCCTTCTGGACGGTGGTCAAAGGTTTGCAGCGCTTATGACAAGTACTGTGACCACTT GGGAAGCTCAATTGCAATCTCGCTATTCGCTTCTCTTCTTCTGCTTCTCCTTGTTTTCCTCTCCGTCCTGTCTCTCCACCGCAAGATCCCACCTCCTGCC TAG
AA sequence Show only first row Show all	>Lus10033972 pacid=23154820 polypeptide=Lus10033972 locus=Lus10033972.g ID=Lus10033972.BGIv1.0 annot-version=v1.0 MSSSKFNENVMNKFRRPYESKDLFTYFGEEVKCDCGFRAARLMKLKFEKYFNCRFYHCRFEKKLEVVLAKNSVRSEMRATMETRLVEKDAKIEVARTEWA VERAGIIKCKNRYFVAALCVASAYTHNSASISGSDPEATSSHQVLAPFPSGRWSKVCSAYDKYCDHLGSSIAISLFASLLLLLLVFLSVLSLHRKIPPPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	3.0	0.9626
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	4.2	0.9626
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10000206 [exp]	4.9	0.9435
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	5.2	0.9626
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	6.0	0.9072
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	6.0	0.9626
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	6.7	0.9626
AT5G58610			PHD finger transcription facto...		Lus10015250 [exp]	7.0	0.7825
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	7.3	0.9469
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	7.5	0.8946

Compare expression of checked genes

Lus10033972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.