Plant FIBer expression Database

Lus10033973 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15563 144 / 3e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012807
[exp]
303 / 1e-105 AT4G15563 147 / 6e-46 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G204800
[exp]
257 / 1e-86 AT4G15563 143 / 6e-43 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Lus10033973 pacid=23154639 polypeptide=Lus10033973 locus=Lus10033973.g ID=Lus10033973.BGIv1.0 annot-version=v1.0
ATGAACGAATCGGCAGCAATATTGGAGAGCCAACTGCCGCTCGATATCGCCCTCAAAATCGCTTCGTCTCTTCCGGTTTCGGATGTTTGCGCTCTCGCCA
GCTGCTCTCACTTCTGGAGGGAATTGTGCTCCTCCGATTCCATCTGGGAGTCTCTCGCCCGCCGGAGATGGCCTTCCCCAACATTCCTCGGCGACTCTTC
TTCTTCTTCTAATTCGGGATGGAAGGAGGTTTACGTTGGGAAGCACAGAGACATGACCGGAAGAGTGAATGCGGTGATTGGGATCGTGAATCGACGCTGT
ATAACTGAATCAATTGAAGTTGGTGATTACCTTAAAGCAATCGGGGAATTGAGTGCCATGGAGCTGGCCTTTGGAGATATTCAAATGCTCCTCTTCAGAC
CAAACTTATCCGTTCTGCTTAACTTGGTTGCCTTGCATTACTGTATCTTCTGCCTTCAATCCCCGGCCTGGGAGGTTGTGGAAGCAATGAAAACCTGCAA
GATATCAGAGAGGCAAGTGTGTGTGAAATGGTGGAAGCTGGGAAGATGGTTCTATGGATTCCGGATGAGGGATGAGTCTCATTCTCGTCAGGTTTCCCTT
CAAGAGCTAGTGACTGATCAGGAGGAGGGTAAGGAGGTTTTTGGAGTCCTCCGCAGGGGCGCCGTTCATGAGGTCTTACGTGTTTTGATCTGTGTCGCAA
CTGTTGCTTCCAGTCCATGGCCTTGTTCAAGAACAGAATGA
AA sequence
>Lus10033973 pacid=23154639 polypeptide=Lus10033973 locus=Lus10033973.g ID=Lus10033973.BGIv1.0 annot-version=v1.0
MNESAAILESQLPLDIALKIASSLPVSDVCALASCSHFWRELCSSDSIWESLARRRWPSPTFLGDSSSSSNSGWKEVYVGKHRDMTGRVNAVIGIVNRRC
ITESIEVGDYLKAIGELSAMELAFGDIQMLLFRPNLSVLLNLVALHYCIFCLQSPAWEVVEAMKTCKISERQVCVKWWKLGRWFYGFRMRDESHSRQVSL
QELVTDQEEGKEVFGVLRRGAVHEVLRVLICVATVASSPWPCSRTE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15563 unknown protein Lus10033973
[exp]
0 1
AT1G52155 unknown protein Lus10038269
[exp]
6.2 0.9036
AT1G11655 unknown protein Lus10002065
[exp]
16.9 0.8871
AT3G09760 RING/U-box superfamily protein... Lus10019931
[exp]
18.7 0.8854
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Lus10019361
[exp]
21.6 0.8894
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10034847
[exp]
23.1 0.9014
AT4G24130 Protein of unknown function, D... Lus10017330
[exp]
25.0 0.8924
AT4G13830 J20 DNAJ-like 20 (.1.2) Lus10016637
[exp]
29.3 0.8718
Lus10034812
[exp]
31.2 0.8838
Lus10018643
[exp]
32.3 0.8859
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Lus10019989
[exp]
35.0 0.8832

Lus10033973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.